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HG10005123 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005123
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHomeobox protein knotted-1, putative
Genome locationChr08:22989982..22991064
RNA-Seq ExpressionHG10005123
SyntenyHG10005123
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR005539 - ELK domain
IPR008422 - Homeobox KN domain
IPR009057 - Homeobox-like domain superfamily
IPR017970 - Homeobox, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029210.1 Homeobox protein knotted-1-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

XP_022961750.1 homeobox protein knotted-1-like 6 [Cucurbita moschata]2.8e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

XP_022997562.1 homeobox protein knotted-1-like 6 [Cucurbita maxima]2.8e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

XP_023546842.1 homeobox protein knotted-1-like 6 [Cucurbita pepo subsp. pepo]2.8e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

XP_038885812.1 homeobox protein knotted-1-like 6 [Benincasa hispida]6.1e-5893.86Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERELQD Q+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLL+WWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

TrEMBL top hitse value%identityAlignment
A0A0A0LNB7 Homeobox domain-containing protein4.7e-5692.11Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELN GERELQD Q+RLEDKGLKDMLLSRFG HIGTLKLEFSKKKKKGKLPKEGRKVLLEWW+VHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

A0A1S3BA77 homeobox protein knotted-1-like 64.7e-5692.11Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELN GERELQD Q+RLEDKGLKDMLLSRFG HIGTLKLEFSKKKKKGKLPKEGRKVLLEWW+VHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

A0A5A7UYU5 Homeobox protein knotted-1-like 64.7e-5692.11Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELN GERELQD Q+RLEDKGLKDMLLSRFG HIGTLKLEFSKKKKKGKLPKEGRKVLLEWW+VHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

A0A6J1HD67 homeobox protein knotted-1-like 61.3e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

A0A6J1K5E4 homeobox protein knotted-1-like 61.3e-5894.74Show/hide
Query:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN
        MSSDDELNWGERE+QDAQ+RLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADK ALAETTGLDPKQINNWFIN
Subjt:  MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFIN

Query:  QRKRHWKPSENLEF
        QRKRHWKPSE+++F
Subjt:  QRKRHWKPSENLEF

SwissProt top hitse value%identityAlignment
O04134 Homeobox protein knotted-1-like 19.6e-3862.07Show/hide
Query:  SSDDEL--NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        SS+DE   + GE E+ +   R ED+ LK+ LL ++  ++ +LK E SKKKKKGKLPKE R+ LL WW +HYKWPYP+E++K ALAE+TGLD KQINNWFI
Subjt:  SSDDEL--NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEFM
        NQRKRHWKPSE+++FM
Subjt:  NQRKRHWKPSENLEFM

P46639 Homeobox protein knotted-1-like 15.6e-3862.39Show/hide
Query:  SSDDEL---NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWF
        SSD+E    + GE EL +   R ED+ LK+ LL ++  ++ +LK E SKKKKKGKLPKE R+ LL WW +HYKWPYP+E++K ALAE+TGLD KQINNWF
Subjt:  SSDDEL---NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWF

Query:  INQRKRHWKPSENLEFM
        INQRKRHWKPSE+++FM
Subjt:  INQRKRHWKPSENLEFM

P46640 Homeobox protein knotted-1-like 21.4e-4169.57Show/hide
Query:  MSSDDELNWGER-ELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        +SSD+EL   +     D+Q R  D+ LKD LL +FGSHI +LKLEFSKKKKKGKLP+E R+ LL+WWNVH KWPYPTE DK +LAE TGLD KQINNWFI
Subjt:  MSSDDELNWGER-ELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEF
        NQRKRHWKPSEN+ F
Subjt:  NQRKRHWKPSENLEF

Q41330 Homeotic protein knotted-12.8e-3760.71Show/hide
Query:  DDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFINQRK
        D + + GE EL +   R ED+ LK+ LL ++  ++ +LK E SKKKKKGKLPK+ R+ L+ WW +HYKWPYP+E++K ALAE+TGLD KQINNWFINQRK
Subjt:  DDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFINQRK

Query:  RHWKPSENLEFM
        RHWKPSE+++FM
Subjt:  RHWKPSENLEFM

Q84JS6 Homeobox protein knotted-1-like 62.4e-4471.3Show/hide
Query:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        +SSD+EL+ G+ E+ +D + R ED+ LKD LL +FGS I TLKLEFSKKKKKGKLP+E R+ LL+WWN+HYKWPYPTE DK ALA+ TGLD KQINNWFI
Subjt:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEF
        NQRKRHWKPSEN+ F
Subjt:  NQRKRHWKPSENLEF

Arabidopsis top hitse value%identityAlignment
AT1G23380.1 KNOTTED1-like homeobox gene 61.7e-4571.3Show/hide
Query:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        +SSD+EL+ G+ E+ +D + R ED+ LKD LL +FGS I TLKLEFSKKKKKGKLP+E R+ LL+WWN+HYKWPYPTE DK ALA+ TGLD KQINNWFI
Subjt:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEF
        NQRKRHWKPSEN+ F
Subjt:  NQRKRHWKPSENLEF

AT1G23380.2 KNOTTED1-like homeobox gene 61.7e-4571.3Show/hide
Query:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        +SSD+EL+ G+ E+ +D + R ED+ LKD LL +FGS I TLKLEFSKKKKKGKLP+E R+ LL+WWN+HYKWPYPTE DK ALA+ TGLD KQINNWFI
Subjt:  MSSDDELNWGEREL-QDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEF
        NQRKRHWKPSEN+ F
Subjt:  NQRKRHWKPSENLEF

AT1G62360.1 KNOX/ELK homeobox transcription factor4.1e-3660.53Show/hide
Query:  SSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFINQ
        SS++E++    E  D Q   ED+ LK  LL ++  ++G+LK EF KK+KKGKLPKE R+ LL+WW+ HYKWPYP+E  K ALAE+TGLD KQINNWFINQ
Subjt:  SSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFINQ

Query:  RKRHWKPSENLEFM
        RKRHWKPSE+++F+
Subjt:  RKRHWKPSENLEFM

AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 21.0e-4269.57Show/hide
Query:  MSSDDELNWGER-ELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI
        +SSD+EL   +     D+Q R  D+ LKD LL +FGSHI +LKLEFSKKKKKGKLP+E R+ LL+WWNVH KWPYPTE DK +LAE TGLD KQINNWFI
Subjt:  MSSDDELNWGER-ELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFI

Query:  NQRKRHWKPSENLEF
        NQRKRHWKPSEN+ F
Subjt:  NQRKRHWKPSENLEF

AT4G08150.1 KNOTTED-like from Arabidopsis thaliana4.0e-3962.39Show/hide
Query:  SSDDEL---NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWF
        SSD+E    + GE EL +   R ED+ LK+ LL ++  ++ +LK E SKKKKKGKLPKE R+ LL WW +HYKWPYP+E++K ALAE+TGLD KQINNWF
Subjt:  SSDDEL---NWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWF

Query:  INQRKRHWKPSENLEFM
        INQRKRHWKPSE+++FM
Subjt:  INQRKRHWKPSENLEFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATAAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCA
CATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTTCACTATAAATGGCCAT
ATCCTACGGAAGCTGATAAGGCTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCGTCGGAA
AATCTCGAATTTATGGCTGGTGGAAAGGCAGATTTGCTTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATAAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCA
CATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTTCACTATAAATGGCCAT
ATCCTACGGAAGCTGATAAGGCTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCGTCGGAA
AATCTCGAATTTATGGCTGGTGGAAAGGCAGATTTGCTTTCCTGA
Protein sequenceShow/hide protein sequence
MSSDDELNWGERELQDAQIRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKAALAETTGLDPKQINNWFINQRKRHWKPSE
NLEFMAGGKADLLS