CuGenDBv2

Gene ID	HG10005131
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ubiquitin
Genome location	Chr08:23043927..23046201
RNA-Seq Expression	HG10005131
Synteny	HG10005131
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0019941 - modification-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0031386 - protein tag (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002906 - Ribosomal protein S27a IPR011332 - Zinc-binding ribosomal protein IPR038582 - S27a-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061078.1 ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa]

1.3e-39

98.81

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

XP_004142977.1 ubiquitin-40S ribosomal protein S27a [Cucumis sativus]

1.3e-39

98.81

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

XP_022132058.1 ubiquitin-40S ribosomal protein S27a-like [Momordica charantia]

1.7e-39

97.62

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGG+KKRKKKTYTKPKKIKHKKKKVKLAVLQFYK+DDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

XP_022961646.1 ubiquitin-40S ribosomal protein S27a-like [Cucurbita moschata]

5.9e-40

100

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

XP_022997484.1 ubiquitin-40S ribosomal protein S27a-like [Cucurbita maxima]

5.9e-40

100

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQL6 Ubiquitin

6.4e-40

98.81

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

A0A5A7V0J4 Ubiquitin

6.4e-40

98.81

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

A0A6J1BRE2 Ubiquitin

6.4e-40

98.81

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

A0A6J1HAY0 Ubiquitin

2.9e-40

100

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

A0A6J1KBF5 Ubiquitin

2.9e-40

100

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

SwissProt top hits

e value

%identity

Alignment

P47905 Ubiquitin-40S ribosomal protein S27a

4.4e-38

96.25

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQK
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK

P59232 Ubiquitin-40S ribosomal protein S27a-2

9.8e-38

93.9

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

P59233 Ubiquitin-40S ribosomal protein S27a-3

1.3e-37

92.68

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

P62980 Ubiquitin-40S ribosomal protein S27a

5.6e-41

96.43

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

P62981 Ubiquitin-40S ribosomal protein S27a

5.6e-41

96.43

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

Arabidopsis top hits

e value

%identity

Alignment

AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein

3.0e-34

Show/hide

Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
        LRGGAKKRKKKTYTKPKKIKH  KKVKLAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++K
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK

AT2G47110.1 ubiquitin 6

7.0e-39

93.9

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

AT2G47110.2 ubiquitin 6

7.0e-39

93.9

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

AT3G62250.1 ubiquitin 5

9.1e-39

92.68

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Query:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        LRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  LRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

Sequences

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CDS sequence

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ATGGATCCCAATGACCAAGAGTGGAAGAAAAATTCAGGGTCAAAGGAGGAGGAAGAACAAGTAGTAAATCAAGTCCAGTCATCGAAAAAGGAAAACAATGTCAGAAAGAA
AGCCGGAGCGGCAACATTGCTCCGTGGTGGTGCTAAGAAGCGCAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTTC
TTCAGTTTTACAAGGTCGACGATTCGGGAAAGGTTCAGAGGCTCAGGAAGGAGTGCCCTAACGCTGAATGCGGAGCTGGTACATTTATGGCCAATCATTTCGATCGCCAT
TACTGTGGCAAGTGTGGCTTGACTTACGTGTATCAGAAGCCCGGCGGCGATTAG

mRNA sequence

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Protein sequence

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MDPNDQEWKKNSGSKEEEEQVVNQVQSSKKENNVRKKAGAATLLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRH
YCGKCGLTYVYQKPGGD

HG10005131 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome