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HG10005132 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005132
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationChr08:23057465..23058291
RNA-Seq ExpressionHG10005132
SyntenyHG10005132
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB99107.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis]7.8e-3181.4Show/hide
Query:  KKAKKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTNCLIV
        + +KKMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS  SL      CT+ L++
Subjt:  KKAKKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTNCLIV

KAA0057130.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa]2.4e-32100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL

KAB5564305.1 hypothetical protein DKX38_004359 [Salix brachista]7.8e-3186.59Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPS--LPP-SLHSCTNCL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN S  LPP S H C  C+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPS--LPP-SLHSCTNCL

KAG6782578.1 hypothetical protein POTOM_011988 [Populus tomentosa]7.8e-3186.59Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL--PPSL--HSCTNC
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN SL  PP L  H C  C
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL--PPSL--HSCTNC

RAL42253.1 hypothetical protein DM860_012036 [Cuscuta australis]1.0e-3085.71Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTN
        MIIPVRCFTCGKVIGNKWD+YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN    P    CT+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTN

TrEMBL top hitse value%identityAlignment
A0A328DEA5 Uncharacterized protein4.9e-3185.71Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTN
        MIIPVRCFTCGKVIGNKWD+YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN    P    CT+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTN

A0A540N402 Uncharacterized protein8.4e-3195.65Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLP
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN SLP
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLP

A0A5A7UPU3 DNA-directed RNA polymerases I, II, and III subunit RPABC51.2e-32100Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSL

A0A5N5N9W5 Uncharacterized protein3.8e-3186.59Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPS--LPP-SLHSCTNCL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN S  LPP S H C  C+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPS--LPP-SLHSCTNCL

W9RW11 DNA-directed RNA polymerases I, II, and III subunit RPABC53.8e-3181.4Show/hide
Query:  KKAKKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTNCLIV
        + +KKMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS  SL      CT+ L++
Subjt:  KKAKKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTNCLIV

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC51.6e-2683.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.2e-2992.19Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc59.3e-2788.71Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 101.2e-2992.19Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.1e-3084.51Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPS
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+     P+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPS

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit8.3e-3192.19Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

AT1G61700.1 RNA polymerases N / 8 kDa subunit7.5e-3284.51Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPS
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+     P+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPSLPPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATTGCCATGCTCACTTTGGCAAAAAAGAATAATGTATGTATCATAATTTTCCTATTATTTGAAACGTTGGGTCATAAAAGGAATGGGCATTGGGAGATGGGCTG
GTATGGTAGGTCAAAGCCCAAAGAAAAAAGATTTAAAAAAGAAATACCGAAGGTGAAATTGCGTGGGTTGTGCAGAAAGAAAGCGAAGAAGATGATCATCCCAGTGCGTT
GCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTTTACAGGCAGACTATTCAGAAGGGGATGCACTTGATGCACTGGGCTTGGTTCGCTAC
TGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCTTCTCTCCCTCCTTCTTTACATTCATGCACGAATTGTTTGAT
TGTTGATGTGCACTTTTGCCTCCTACTTCTATTTTTCGCTGCCCTTTTACAGTTTAATCACTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGGTGGGGAACAA
GTTTTCTGCTTGTTCATGTGCAGGAGTCAGCATTGGCGTTTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATTGCCATGCTCACTTTGGCAAAAAAGAATAATGTATGTATCATAATTTTCCTATTATTTGAAACGTTGGGTCATAAAAGGAATGGGCATTGGGAGATGGGCTG
GTATGGTAGGTCAAAGCCCAAAGAAAAAAGATTTAAAAAAGAAATACCGAAGGTGAAATTGCGTGGGTTGTGCAGAAAGAAAGCGAAGAAGATGATCATCCCAGTGCGTT
GCTTCACTTGCGGAAAGGTGATTGGAAACAAGTGGGATCATTACCTTGATCTTTTACAGGCAGACTATTCAGAAGGGGATGCACTTGATGCACTGGGCTTGGTTCGCTAC
TGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGTAATCCTTCTCTCCCTCCTTCTTTACATTCATGCACGAATTGTTTGAT
TGTTGATGTGCACTTTTGCCTCCTACTTCTATTTTTCGCTGCCCTTTTACAGTTTAATCACTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGGTGGGGAACAA
GTTTTCTGCTTGTTCATGTGCAGGAGTCAGCATTGGCGTTTACTTAA
Protein sequenceShow/hide protein sequence
MPIAMLTLAKKNNVCIIIFLLFETLGHKRNGHWEMGWYGRSKPKEKRFKKEIPKVKLRGLCRKKAKKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRY
CCRRMLMTHVDLIEKLLNYNSNPSLPPSLHSCTNCLIVDVHFCLLLLFFAALLQFNHFLFQLWISLIPVRWGTSFLLVHVQESALAFT