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HG10005152 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005152
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat (PPR-like) superfamily protein
Genome locationChr07:74918..75169
RNA-Seq ExpressionHG10005152
SyntenyHG10005152
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041278.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.3e-3187.95Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIR+GVL +VVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGAT N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

XP_022147934.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia]5.1e-3289.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRF GMDAAYSV+YRMREA ISPDVITYNSLIAGAT NCSLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

XP_022973869.1 putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucurbita maxima]3.3e-3189.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGA+ N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

XP_022973870.1 putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucurbita maxima]3.3e-3189.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGA+ N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

XP_031740560.1 putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus]1.1e-3189.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIR+GVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGAT N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KYL3 Uncharacterized protein5.5e-3289.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIR+GVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGAT N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

A0A1S3B4M5 putative pentatricopeptide repeat-containing protein At4g179152.1e-3187.95Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIR+GVL +VVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGAT N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

A0A6J1D2P0 putative pentatricopeptide repeat-containing protein At4g179152.4e-3289.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRF GMDAAYSV+YRMREA ISPDVITYNSLIAGAT NCSLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

A0A6J1ICF9 putative pentatricopeptide repeat-containing protein At4g17915 isoform X21.6e-3189.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGA+ N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

A0A6J1IFW8 putative pentatricopeptide repeat-containing protein At4g17915 isoform X11.6e-3189.16Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNSLIAGA+ N SLEQSL LFEEMLQ
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

SwissProt top hitse value%identityAlignment
O04504 Pentatricopeptide repeat-containing protein At1g098208.2e-0942.35Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML
        M KA   + D    G   +VV+YNTL+DGYC+  G   M  A +VL  M E D+SP++ T+N LI G   + +L  S+ +F+EML
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML

P0C043 Putative pentatricopeptide repeat-containing protein At4g179151.3e-2263.86Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ
        ++KAE+ IIDGIRLGV  DVVTYNTL+ GYCRF G++ AY+V  RMR+A I PDV TYNSLIAGA     L+  L LF+EML+
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

Q0WVK7 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial1.9e-1039.51Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM
        + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY ++I+G      + ++  LF EM
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM

Q56XR6 Pentatricopeptide repeat-containing protein At5g466804.5e-2364.63Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML
        +++AET +IDGIRLGVL DV+TYNTL+ GY RF G+D AY+V  RMREA I PDV TYNSLI+GA  N  L + L LF+EML
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML

Q76C99 Protein Rf1, mitochondrial3.7e-0941.43Show/hide
Query:  IRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM
        +R+GV  +V+TYNTL++GYC    MD A  +L  M    + P+ +TY++LI G      +E +L LF+EM
Subjt:  IRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM

Arabidopsis top hitse value%identityAlignment
AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.4e-1139.51Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM
        + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY ++I+G      + ++  LF EM
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM

AT1G05670.2 Pentatricopeptide repeat (PPR-like) superfamily protein1.4e-1139.51Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM
        + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY ++I+G      + ++  LF EM
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM

AT1G09820.1 Pentatricopeptide repeat (PPR-like) superfamily protein5.8e-1042.35Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML
        M KA   + D    G   +VV+YNTL+DGYC+  G   M  A +VL  M E D+SP++ T+N LI G   + +L  S+ +F+EML
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML

AT1G64580.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-0935.44Show/hide
Query:  DGIRL-------GVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM
        DG++L       G++ D  TYNTL+ GYC+   ++ A  V  RM +  +SPD++TYN L+     N  +E++L + E++
Subjt:  DGIRL-------GVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEM

AT5G46680.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.2e-2464.63Show/hide
Query:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML
        +++AET +IDGIRLGVL DV+TYNTL+ GY RF G+D AY+V  RMREA I PDV TYNSLI+GA  N  L + L LF+EML
Subjt:  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEML


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAAGCTGAAACTGCCATAATAGACGGTATTCGGTTAGGGGTTCTCCGTGATGTCGTAACTTACAATACTTTGGTTGATGGATATTGTCGATTTAGTGGCATGGA
TGCTGCTTATTCTGTTCTTTATAGAATGAGGGAAGCTGATATTAGCCCAGATGTGATTACTTACAATTCTTTGATAGCTGGTGCAACCATGAATTGTTCATTAGAACAAT
CTCTTACTCTGTTCGAAGAAATGCTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAAGCTGAAACTGCCATAATAGACGGTATTCGGTTAGGGGTTCTCCGTGATGTCGTAACTTACAATACTTTGGTTGATGGATATTGTCGATTTAGTGGCATGGA
TGCTGCTTATTCTGTTCTTTATAGAATGAGGGAAGCTGATATTAGCCCAGATGTGATTACTTACAATTCTTTGATAGCTGGTGCAACCATGAATTGTTCATTAGAACAAT
CTCTTACTCTGTTCGAAGAAATGCTTCAATAA
Protein sequenceShow/hide protein sequence
MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ