CuGenDBv2

Gene ID	HG10005449
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein E6-like
Genome location	Chr07:2696508..2698382
RNA-Seq Expression	HG10005449
Synteny	HG10005449
Gene Ontology terms	NA
InterPro domains	IPR040290 - Protein E6-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059120.1 protein E6-like [Cucumis melo var. makuwa]

1.4e-64

71.5

Show/hide

Query:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        A +ASTTFN     FFFL LLSSVQ EARVNKFFSKF+HTDHE+V++  L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITD
Subjt:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ
        VEEEIL G+G ++E N KS +P  N +QT + E     E+YQN NYE  NGFRNSEYEN+NE +NSEYE++  NN  RNYQYQSNFED GYRR R+EPT+
Subjt:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ

Query:  QQGMSDTRFMENGR
        QQGMSDTRFMENGR
Subjt:  QQGMSDTRFMENGR

XP_008455495.1 PREDICTED: protein E6-like [Cucumis melo]

1.8e-64

71.5

Show/hide

Query:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        A +ASTTFN     FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+   L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITD
Subjt:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ
        VEEEIL G+G ++E N KS +P  N +QT + E     E+YQN NYE  NGFRNSEYEN+NE +NSEYE++  NN  RNYQYQSNFED GYRR R+EPT+
Subjt:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ

Query:  QQGMSDTRFMENGR
        QQGMSDTRFMENGR
Subjt:  QQGMSDTRFMENGR

XP_011659700.1 protein E6 [Cucumis sativus]

1.8e-64

70.05

Show/hide

Query:  AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRT
        A +AS TF     +  FFFFFL L+SSVQIEARVNKFFSKF+HTDHE V N L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D DADENTRT
Subjt:  AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRT

Query:  ITDVEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYE
        ITDVEEEIL G+G ++EGN KS +P  N ++T N E     E+YQN NYEN NGFRNSEY+N NE +NSEYE++  NN  RNY+ Q NFE+ GYRR R+E
Subjt:  ITDVEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYE

Query:  PTQQQGMSDTRFMENGR
        PT+Q+GMSDTRFMENGR
Subjt:  PTQQQGMSDTRFMENGR

XP_022969172.1 probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima]

8.1e-65

64.52

Show/hide

Query:  MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        MAMAAS TF  L F F   LLSSVQIEARVNKFFSKF+H D + VL +   PAPVS PPEISPSLAPTPAPAPFFDESQNAYGLYG D+D  E++RTITD
Subjt:  MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE-----------------------SDF
        VEEEILA DGE++  HKS Y  TNL T+N+ESP+RYE        Y+N+ YE+ N  RNSEYENNNE++NSEYE                       SDF
Subjt:  VEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE-----------------------SDF

Query:  ENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQN
        EN+  RNYQYQSN E DGYR+RRYEPT+QQGMSDTRFMENGR   E N
Subjt:  ENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQN

XP_038886989.1 protein E6-like [Benincasa hispida]

2.9e-78

81.99

Show/hide

Query:  AASTTFNLL-FFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDV-LNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEE
        AASTTFNLL FFFFF+ LLSSVQIEARVNKFFSKF++TD E V   LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRD+DADENTRTITDVEE
Subjt:  AASTTFNLL-FFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDV-LNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEE

Query:  EILAGDG--EEEGNHKSSYPTTNLQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQG
        EILAGDG  E+E NHK++YP TN QT N         Y N NYEN NGFRNSEYEN+NE +NSEYES FENNNARNYQYQSNFEDDGYRRRR+EPT+QQG
Subjt:  EILAGDG--EEEGNHKSSYPTTNLQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQG

Query:  MSDTRFMENGR
        MSDTRFMENGR
Subjt:  MSDTRFMENGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1D4 Uncharacterized protein

8.7e-65

70.05

Show/hide

Query:  AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRT
        A +AS TF     +  FFFFFL L+SSVQIEARVNKFFSKF+HTDHE V N L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D DADENTRT
Subjt:  AMAASTTF-----NLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN-LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRT

Query:  ITDVEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYE
        ITDVEEEIL G+G ++EGN KS +P  N ++T N E     E+YQN NYEN NGFRNSEY+N NE +NSEYE++  NN  RNY+ Q NFE+ GYRR R+E
Subjt:  ITDVEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYE

Query:  PTQQQGMSDTRFMENGR
        PT+Q+GMSDTRFMENGR
Subjt:  PTQQQGMSDTRFMENGR

A0A1S3C0L5 protein E6-like

8.7e-65

71.5

Show/hide

Query:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        A +ASTTFN     FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+   L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITD
Subjt:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ
        VEEEIL G+G ++E N KS +P  N +QT + E     E+YQN NYE  NGFRNSEYEN+NE +NSEYE++  NN  RNYQYQSNFED GYRR R+EPT+
Subjt:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ

Query:  QQGMSDTRFMENGR
        QQGMSDTRFMENGR
Subjt:  QQGMSDTRFMENGR

A0A5A7UVJ1 Protein E6-like

6.7e-65

71.5

Show/hide

Query:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        A +ASTTFN     FFFL LLSSVQ EARVNKFFSKF+HTDHE+V++  L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITD
Subjt:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLN--LPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ
        VEEEIL G+G ++E N KS +P  N +QT + E     E+YQN NYE  NGFRNSEYEN+NE +NSEYE++  NN  RNYQYQSNFED GYRR R+EPT+
Subjt:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ

Query:  QQGMSDTRFMENGR
        QQGMSDTRFMENGR
Subjt:  QQGMSDTRFMENGR

A0A5D3DDN1 Protein E6-like

8.7e-65

71.5

Show/hide

Query:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        A +ASTTFN     FFFL LLSSVQ EARVNKFFSKF+HTDHE+V+   L PAP+S PPE SPSLAPTPAPAPFFDESQNAYGLYG D D DEN RTITD
Subjt:  AMAASTTFNLLFF-FFFLFLLSSVQIEARVNKFFSKFVHTDHEDVL--NLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ
        VEEEIL G+G ++E N KS +P  N +QT + E     E+YQN NYE  NGFRNSEYEN+NE +NSEYE++  NN  RNYQYQSNFED GYRR R+EPT+
Subjt:  VEEEILAGDG-EEEGNHKSSYPTTN-LQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQ

Query:  QQGMSDTRFMENGR
        QQGMSDTRFMENGR
Subjt:  QQGMSDTRFMENGR

A0A6J1HVL6 probable ATP-dependent RNA helicase ddx42 isoform X2

3.9e-65

64.52

Show/hide

Query:  MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD
        MAMAAS TF  L F F   LLSSVQIEARVNKFFSKF+H D + VL +   PAPVS PPEISPSLAPTPAPAPFFDESQNAYGLYG D+D  E++RTITD
Subjt:  MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNL--PPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITD

Query:  VEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE-----------------------SDF
        VEEEILA DGE++  HKS Y  TNL T+N+ESP+RYE        Y+N+ YE+ N  RNSEYENNNE++NSEYE                       SDF
Subjt:  VEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEE-------YQNTNYENINGFRNSEYENNNENKNSEYE-----------------------SDF

Query:  ENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQN
        EN+  RNYQYQSN E DGYR+RRYEPT+QQGMSDTRFMENGR   E N
Subjt:  ENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G28400.1 unknown protein

4.5e-05

29.96

Show/hide

Query:  MAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHED-----VLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTIT
        MA ST  +LLFFF  L LLS+ QI AR + FF KF     +D      + L  +  +   E   +         F  ES N YGLYG ++  + N     
Subjt:  MAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHED-----VLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTIT

Query:  DVEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEEYQNTNYEN--INGFRNSEYENNN---------ENKNSEYESDF--------ENNNARNYQY
        D +EE    +  +E  +  ++ T +L +E  ES   YEE      EN    G+ N E+ NNN         E  N++Y+ ++         NNN  NY+Y
Subjt:  DVEEEILAGDGEEEGNHKSSYPTTNLQTENYESPRRYEEYQNTNYEN--INGFRNSEYENNN---------ENKNSEYESDF--------ENNNARNYQY

Query:  QSNFEDDGY----------------------RRRRYE----PTQQQGMSDTRFMENG
          N +++ +                      R   Y+      ++QGMSDTRFME G
Subjt:  QSNFEDDGY----------------------RRRRYE----PTQQQGMSDTRFMENG

AT2G33850.1 unknown protein

7.7e-05

29.15

Show/hide

Query:  ASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTD--HEDVLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEE
        A +T + LFFF    +L S QI AR +  F KF   D   ++  NL P   +   E      P      F  +S+N YGLYG ++  + N        EE
Subjt:  ASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTD--HEDVLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEE

Query:  ILAGDGEEEGNHKSSYPTTNLQ--TENYESPRRYEE-YQNTNYENINGFRNSEYENNN----ENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEP-
        +     E+  N+  S+ T +L    +  ES + Y+E Y  T     N    S YEN+N    + ++++    ++  + ++  Y  N    G  +R  EP 
Subjt:  ILAGDGEEEGNHKSSYPTTNLQ--TENYESPRRYEE-YQNTNYENINGFRNSEYENNN----ENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEP-

Query:  -------TQQQGMSDTRFMENGR
                ++QGMSDTR+M NG+
Subjt:  -------TQQQGMSDTRFMENGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGGCAGCTTCCACTACTTTCAACCTTCTCTTCTTCTTCTTCTTCCTCTTCCTCCTCTCCTCTGTCCAAATCGAAGCCAGAGTCAATAAATTCTTCAGTAAGTT
CGTTCATACGGATCACGAGGATGTTCTTAATCTTCCACCGGCGCCGGTCTCTGCTCCGCCTGAGATTTCTCCATCTCTGGCACCAACGCCGGCTCCCGCGCCGTTTTTCG
ACGAATCGCAGAATGCTTACGGTCTATACGGACGTGATTCCGACGCTGATGAAAATACTCGGACGATCACCGACGTCGAGGAGGAGATTCTCGCAGGAGACGGTGAGGAG
GAGGGGAATCACAAATCTAGCTATCCGACGACGAATTTACAGACGGAAAATTACGAAAGCCCTAGAAGATACGAGGAGTACCAAAACACTAACTACGAGAACATCAACGG
ATTTAGAAATTCGGAGTATGAGAACAACAATGAGAACAAAAATTCCGAGTACGAGAGCGATTTTGAGAACAATAACGCTAGAAATTACCAGTACCAGAGCAATTTTGAGG
ACGACGGCTACAGAAGGAGGCGATACGAACCGACACAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGAATTAGAATTGAACAGAACGTCTCTTGGGTT
CTAGTTTACCCAGGAAGAAGAAGCTTCAAATTGCCTCCATATAGGCAAATGATTAGGGTTGCAAGGTTTTTAAGCCCTACTCATCGTTTTGTAAGGAAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAMAASTTFNLLFFFFFLFLLSSVQIEARVNKFFSKFVHTDHEDVLNLPPAPVSAPPEISPSLAPTPAPAPFFDESQNAYGLYGRDSDADENTRTITDVEEEILAGDGEE
EGNHKSSYPTTNLQTENYESPRRYEEYQNTNYENINGFRNSEYENNNENKNSEYESDFENNNARNYQYQSNFEDDGYRRRRYEPTQQQGMSDTRFMENGRIRIEQNVSWV
LVYPGRRSFKLPPYRQMIRVARFLSPTHRFVRK

HG10005449 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome