; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10005453 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005453
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationChr07:2722273..2724048
RNA-Seq ExpressionHG10005453
SyntenyHG10005453
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]4.8e-7097.24Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]9.6e-7198.62Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]2.0e-6895.17Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]5.9e-6893.79Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE A+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]3.3e-7199.31Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein2.3e-7097.24Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284404.7e-7198.62Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein4.7e-7198.62Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like9.7e-6995.17Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like2.8e-6893.79Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE A+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.0e-4669.92Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV
        VDKWGR+E   AA+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV

Q97W73 Single-stranded DNA binding protein Ssb4.7e-0429.06Show/hide
Query:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR
        KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG +  T        +K G  V + NA    FKG ++L  +   +
Subjt:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR

Query:  VEVAEAANFEVKEDNNL
         ++AEA+     E + +
Subjt:  VEVAEAANFEVKEDNNL

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein2.0e-4267.65Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA E  +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein2.0e-4267.65Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA E  +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein4.8e-4468.66Show/hide
Query:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DKWGRVEV E A+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein5.1e-4671.85Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+E  E A+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein7.2e-4869.92Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV
        VDKWGR+E   AA+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAG
TTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAG
TTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
Protein sequenceShow/hide protein sequence
MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE