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HG10005454 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005454
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionEukaryotic translation initiation factor 4C
Genome locationChr07:2727246..2727586
RNA-Seq ExpressionHG10005454
SyntenyHG10005454
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR001253 - Translation initiation factor 1A (eIF-1A)
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0670531.1 hypothetical protein [Gossypium klotzschianum]2.6e-3167.54Show/hide
Query:  MPKNKGKGGKNRKR---------------------------AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGG
        MPKNKGKGGKNRKR                           AGDIILVGLRDYQDDKADVI+KYMPDEARLLKAY ELPE TRLNEG+ GG+D+DD+G G
Subjt:  MPKNKGKGGKNRKR---------------------------AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGG

Query:  DAYIEFEDEDIDKI
        D YIEFEDEDIDKI
Subjt:  DAYIEFEDEDIDKI

XP_004144524.1 eukaryotic translation initiation factor 1A [Cucumis sativus]6.9e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_022135622.1 eukaryotic translation initiation factor 1A-like [Momordica charantia]6.9e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLR+YQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_022930658.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata]1.5e-3158.62Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_031490608.1 eukaryotic translation initiation factor 1A [Nymphaea colorata]3.2e-2955.86Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGI GG+DD+DEGG D YIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

TrEMBL top hitse value%identityAlignment
A0A0A0K1Y5 Eukaryotic translation initiation factor 4C3.3e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A1S3C1S5 Eukaryotic translation initiation factor 4C3.3e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A5A7UZV0 Eukaryotic translation initiation factor 4C3.3e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A6J1C384 Eukaryotic translation initiation factor 4C3.3e-3259.31Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLR+YQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A6J1JL52 Eukaryotic translation initiation factor 4C7.5e-3258.62Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

SwissProt top hitse value%identityAlignment
P47813 Eukaryotic translation initiation factor 1A, X-chromosomal8.0e-1561.45Show/hide
Query:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        GK RK+      DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

P47815 Eukaryotic translation initiation factor 1A1.0e-2247.95Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDKI
        RLLKAY ELP+  RLNEG+   +D  +EG GD+ YI+FEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDKI

P56331 Eukaryotic translation initiation factor 1A1.1e-2450.68Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILK MPDEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELP+NTRLNEGI  GG+D++ +   D YIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDKI

Q6GVM3 Eukaryotic translation initiation factor 1A, Y-chromosomal6.1e-1561.45Show/hide
Query:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        GK RK+      DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal8.0e-1561.45Show/hide
Query:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        GK RK+      DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  GKNRKR----AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

Arabidopsis top hitse value%identityAlignment
AT2G04520.1 Nucleic acid-binding, OB-fold-like protein1.5e-2951.03Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG ++DDD+   D Y+EFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein6.9e-3053.1Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein6.9e-3053.1Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein1.3e-2350.78Show/hide
Query:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKR                                                          AGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKR----------------------------------------------------------AGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDE
        RLLKAY ELPENTRLNEGIVG +DDDD+
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGATGTGATTCTCAAATA
CATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAACGAGGGTATCGTTGGGGGTATGGATGATGATGATGAAGGTGGTGGTG
ATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGATGTGATTCTCAAATA
CATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAACGAGGGTATCGTTGGGGGTATGGATGATGATGATGAAGGTGGTGGTG
ATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATATAG
Protein sequenceShow/hide protein sequence
MPKNKGKGGKNRKRAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI