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HG10005474 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005474
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMitochondrial transcription factor 1
Genome locationChr07:2869818..2870192
RNA-Seq ExpressionHG10005474
SyntenyHG10005474
Gene Ontology termsGO:0006418 - tRNA aminoacylation for protein translation (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS71687.1 Os01g0296166 [Oryza sativa Japonica Group]7.6e-0844.79Show/hide
Query:  HVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLPMCIPSVLGLFSGAIMLTP
        HVL+ TPL    I  F T+  +T + +  FPRLPML+PCPGP VT    T  +P+P E QSSP+E    V+         +PSVLGL +G +M  P
Subjt:  HVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLPMCIPSVLGLFSGAIMLTP

CAB3468399.1 unnamed protein product [Digitaria exilis]1.5e-1145.79Show/hide
Query:  MLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLPMCIPSVLGLF
        +L AV     + + LI  PL+ F+ VQ FT++  T  S +Y PRLPM +P PGP VT V +  +LP P EMQSSP  +   +I  P++ PM +PSVLGL 
Subjt:  MLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLPMCIPSVLGLF

Query:  SGAIMLT
         GA  +T
Subjt:  SGAIMLT

GER48275.1 mitochondrial transcription factor 1 [Striga asiatica]1.9e-1449.59Show/hide
Query:  IGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIP
        +GLL     IS            +  HVLILTP  V   VQFF +  +T  S  YFPRLPMLIPCPGPH T VT T + PSP + QSSPV I + VI + 
Subjt:  IGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIP

Query:  IDLPMCIPSVLGLFSGAIMLT
        ++  M  PSVLGL  GA M T
Subjt:  IDLPMCIPSVLGLFSGAIMLT

KAB8084694.1 hypothetical protein EE612_007312 [Oryza sativa]1.5e-0843.2Show/hide
Query:  MRIGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFV
        M +GL T  ++ S+    +  P   E  HVLI  PLVV +    FT+   T S+ +   FPRLPML+P PGPH T       LP P E QSSPV +    
Subjt:  MRIGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFV

Query:  IEIPIDLPMCIPSVLGLFSGAIMLT
            +DL MCIPSV GL +GA  +T
Subjt:  IEIPIDLPMCIPSVLGLFSGAIMLT

PIN11476.1 hypothetical protein CDL12_15921 [Handroanthus impetiginosus]3.6e-1050Show/hide
Query:  GEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLP
        G  GHV IL PL V + VQF T IP T  S  + PRLPMLIP PGPH+T       + SP E+QSSPV + + V+ I +  P
Subjt:  GEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLP

TrEMBL top hitse value%identityAlignment
A0A0P0VBN4 Os01g0891066 protein7.4e-0943.2Show/hide
Query:  MRIGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFV
        M +GL T  ++ S+    +  P   E  HVLI  PLVV +    FT+   T S+ +   FPRLPML+P PGPH T       LP P E QSSPV +    
Subjt:  MRIGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFV

Query:  IEIPIDLPMCIPSVLGLFSGAIMLT
            +DL MCIPSV GL +GA  +T
Subjt:  IEIPIDLPMCIPSVLGLFSGAIMLT

A0A2G9H1U6 Uncharacterized protein1.8e-1050Show/hide
Query:  GEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLP
        G  GHV IL PL V + VQF T IP T  S  + PRLPMLIP PGPH+T       + SP E+QSSPV + + V+ I +  P
Subjt:  GEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDLP

A0A5A7QSC8 Mitochondrial transcription factor 19.0e-1549.59Show/hide
Query:  IGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIP
        +GLL     IS            +  HVLILTP  V   VQFF +  +T  S  YFPRLPMLIPCPGPH T VT T + PSP + QSSPV I + VI + 
Subjt:  IGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIP

Query:  IDLPMCIPSVLGLFSGAIMLT
        ++  M  PSVLGL  GA M T
Subjt:  IDLPMCIPSVLGLFSGAIMLT

A0A6N2MID2 Uncharacterized protein2.0e-0959.32Show/hide
Query:  IVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVI
        +VQF T IP TG SL Y P+LP L+PCPGPHVT VT +  +PSP E+QSSPV I + ++
Subjt:  IVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVI

A0A6N2MR69 Uncharacterized protein5.1e-1063.08Show/hide
Query:  ISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVT
        IS KCML A P   ++GH  ILTP  VF +VQF T IP TG SL Y P+LP L+PCPGPHVT VT
Subjt:  ISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTGGGTTGCTAACATTGATCATTATAATATCTAAAAAATGCATGTTGGTGGCAGTACCAGCAACGGGAGAGGCTGGCCATGTTTTGATCCTAACACCA
TTAGTGGTGTTCATTATAGTGCAGTTCTTTACTATGATACCTTCAACAGGTTCTTCATTAGTGTATTTTCCAAGACTTCCTATGCTTATTCCATGTCCAGGTCCG
CATGTCACATTGGTGACTGTTACTCGTTTACTTCCATCTCCAAGGGAGATGCAATCATCTCCAGTTGAAATTCGAGATTTTGTGATTGAGATCCCAATTGATCTG
CCAATGTGTATTCCATCCGTGTTGGGACTATTTTCTGGTGCAATTATGTTGACACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTGGGTTGCTAACATTGATCATTATAATATCTAAAAAATGCATGTTGGTGGCAGTACCAGCAACGGGAGAGGCTGGCCATGTTTTGATCCTAACACCA
TTAGTGGTGTTCATTATAGTGCAGTTCTTTACTATGATACCTTCAACAGGTTCTTCATTAGTGTATTTTCCAAGACTTCCTATGCTTATTCCATGTCCAGGTCCG
CATGTCACATTGGTGACTGTTACTCGTTTACTTCCATCTCCAAGGGAGATGCAATCATCTCCAGTTGAAATTCGAGATTTTGTGATTGAGATCCCAATTGATCTG
CCAATGTGTATTCCATCCGTGTTGGGACTATTTTCTGGTGCAATTATGTTGACACCATGA
Protein sequenceShow/hide protein sequence
MRIGLLTLIIIISKKCMLVAVPATGEAGHVLILTPLVVFIIVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTVTRLLPSPREMQSSPVEIRDFVIEIPIDL
PMCIPSVLGLFSGAIMLTP