; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10005482 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005482
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionE3 ubiquitin-protein ligase Arkadia
Genome locationChr07:2952721..2953749
RNA-Seq ExpressionHG10005482
SyntenyHG10005482
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8022191.1 hypothetical protein FH972_008015 [Carpinus fangiana]7.9e-0426.09Show/hide
Query:  VLSILSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLR--NHAEAADWVHGGTPDSQVVRTLRMTFESLRRLKDESLDGWCLKKSCC
        +LS+LS +G P  + + ++R I S      +   TSP+ +    T+  V+   +  E+ D +  G  +S  V   R    + R     +++G  L+K   
Subjt:  VLSILSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLR--NHAEAADWVHGGTPDSQVVRTLRMTFESLRRLKDESLDGWCLKKSCC

Query:  KEEGEEEEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFF
        ++  +   +C++C E  E   +  R          C+ +WL   HRCP+CR P+P+V   F
Subjt:  KEEGEEEEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFF
XP_004292643.1 PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Fragaria vesca subsp. vesca]6.1e-0424.28Show/hide
Query:  LSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLRNHAEAA-DWVHGGTPD---SQVVRTLRMTFESLRRLKDESLDGWCLKKSCCKE
        LS +GVP S    + R IF   +   ++     + + IS  +T    N+A  A D V   + +   ++++   + + E L +++ ++L+G  +++ C + 
Subjt:  LSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLRNHAEAA-DWVHGGTPD---SQVVRTLRMTFESLRRLKDESLDGWCLKKSCCKE

Query:  EGEEEEKCMVCLEGL-------------EEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFFP
        +    + C++CL+ L             E+E    R          C+  WL ++H CP+CR PMP V    P
Subjt:  EGEEEEKCMVCLEGL-------------EEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFFP
TrEMBL top hitse value%identityAlignment
A0A5N6R0F2 RING-type domain-containing protein3.8e-0426.09Show/hide
Query:  VLSILSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLR--NHAEAADWVHGGTPDSQVVRTLRMTFESLRRLKDESLDGWCLKKSCC
        +LS+LS +G P  + + ++R I S      +   TSP+ +    T+  V+   +  E+ D +  G  +S  V   R    + R     +++G  L+K   
Subjt:  VLSILSHLGVPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLR--NHAEAADWVHGGTPDSQVVRTLRMTFESLRRLKDESLDGWCLKKSCC

Query:  KEEGEEEEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFF
        ++  +   +C++C E  E   +  R          C+ +WL   HRCP+CR P+P+V   F
Subjt:  KEEGEEEEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICRSPMPWVHAFF
SwissProt top hitse value%identityAlignment
Q6ZNA4 E3 ubiquitin-protein ligase Arkadia3.7e-0437.84Show/hide
Query:  RLKDESLDGWCLKKSCCKEEGEE------EEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICR
        + K  + D +  +K  CK++GEE      EEKC +CL  LEE    +R          CV QWL  + +CPICR
Subjt:  RLKDESLDGWCLKKSCCKEEGEE------EEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICR
Q99ML9 E3 ubiquitin-protein ligase Arkadia3.7e-0437.84Show/hide
Query:  RLKDESLDGWCLKKSCCKEEGEE------EEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICR
        + K  + D +  +K  CK++GEE      EEKC +CL  LEE    +R          CV QWL  + +CPICR
Subjt:  RLKDESLDGWCLKKSCCKEEGEE------EEKCMVCLEGLEEETKTKR---------SCVSQWLSLDHRCPICR
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACCCTCGAGCATTCAACCACCTTTTATTTCCCGACTCCCTAGGCTCCACATGCACAGAAGCCACTGGAAGCGGGTGGTCCGTGACCTATGATTGCTTCCTCTT
TAGTGCCAACCTCCACACTCTATTTCCCCGCAGTGTAGGCGCCACGAATGGCTTCCTCATCCGCCTCCAATTCTCCCACCTTCTCAAACCTCTCTACATTCCACACTCTT
CTTCCTTCTTCTTGGACTCTTCCACCCAACTCCTCCTCCTCCCTCCCTCCTACTTCTCCTCCTACTCCTCTACCCTAAACTTTGTCCTCTCCATCCTCTCCCACCTCGGC
GTCCCTACTTCAAACCCCGACCCTCTTGCCCGCCTCATCTTCTCTTTTACCAACCGCCACCACCTTTCTGCCACCACATCTCCCGTCCCATTGTACATCTCCTTCACCTC
AACCACCGTCCTTCGCAACCACGCCGAGGCTGCCGATTGGGTCCATGGCGGCACCCCGGACTCCCAAGTGGTGAGGACGTTGAGGATGACGTTCGAGTCGCTGAGAAGGT
TGAAAGATGAGAGCCTTGATGGGTGGTGCTTAAAGAAGAGTTGTTGTAAAGAGGAAGGGGAGGAGGAGGAGAAGTGCATGGTGTGCTTGGAAGGGCTTGAAGAGGAAACG
AAGACAAAGCGCAGTTGCGTTTCTCAATGGCTTAGTTTGGATCATCGCTGCCCGATTTGCCGCTCTCCTATGCCTTGGGTTCACGCCTTCTTCCCTGACGCCGACGTCGA
TGCGCCTTCTTCCTTTTCACGTAATTCCACTGACTACCTTAATCTCGATGACGATGATGATAACGATGGTCATAATTTACTGGATGATTCCTACTACACTAGCACAGCTG
AACCGTCTAGGATTTTTACCAAACTAGGGTGCTTTCTTAAGAAAATTGTGCAAAATATGTTGATACACTTATTTTCTGAAGATAATGTCTACTCATCGATCCCTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACCCTCGAGCATTCAACCACCTTTTATTTCCCGACTCCCTAGGCTCCACATGCACAGAAGCCACTGGAAGCGGGTGGTCCGTGACCTATGATTGCTTCCTCTT
TAGTGCCAACCTCCACACTCTATTTCCCCGCAGTGTAGGCGCCACGAATGGCTTCCTCATCCGCCTCCAATTCTCCCACCTTCTCAAACCTCTCTACATTCCACACTCTT
CTTCCTTCTTCTTGGACTCTTCCACCCAACTCCTCCTCCTCCCTCCCTCCTACTTCTCCTCCTACTCCTCTACCCTAAACTTTGTCCTCTCCATCCTCTCCCACCTCGGC
GTCCCTACTTCAAACCCCGACCCTCTTGCCCGCCTCATCTTCTCTTTTACCAACCGCCACCACCTTTCTGCCACCACATCTCCCGTCCCATTGTACATCTCCTTCACCTC
AACCACCGTCCTTCGCAACCACGCCGAGGCTGCCGATTGGGTCCATGGCGGCACCCCGGACTCCCAAGTGGTGAGGACGTTGAGGATGACGTTCGAGTCGCTGAGAAGGT
TGAAAGATGAGAGCCTTGATGGGTGGTGCTTAAAGAAGAGTTGTTGTAAAGAGGAAGGGGAGGAGGAGGAGAAGTGCATGGTGTGCTTGGAAGGGCTTGAAGAGGAAACG
AAGACAAAGCGCAGTTGCGTTTCTCAATGGCTTAGTTTGGATCATCGCTGCCCGATTTGCCGCTCTCCTATGCCTTGGGTTCACGCCTTCTTCCCTGACGCCGACGTCGA
TGCGCCTTCTTCCTTTTCACGTAATTCCACTGACTACCTTAATCTCGATGACGATGATGATAACGATGGTCATAATTTACTGGATGATTCCTACTACACTAGCACAGCTG
AACCGTCTAGGATTTTTACCAAACTAGGGTGCTTTCTTAAGAAAATTGTGCAAAATATGTTGATACACTTATTTTCTGAAGATAATGTCTACTCATCGATCCCTCCTTGA
Protein sequenceShow/hide protein sequence
MLNPRAFNHLLFPDSLGSTCTEATGSGWSVTYDCFLFSANLHTLFPRSVGATNGFLIRLQFSHLLKPLYIPHSSSFFLDSSTQLLLLPPSYFSSYSSTLNFVLSILSHLG
VPTSNPDPLARLIFSFTNRHHLSATTSPVPLYISFTSTTVLRNHAEAADWVHGGTPDSQVVRTLRMTFESLRRLKDESLDGWCLKKSCCKEEGEEEEKCMVCLEGLEEET
KTKRSCVSQWLSLDHRCPICRSPMPWVHAFFPDADVDAPSSFSRNSTDYLNLDDDDDNDGHNLLDDSYYTSTAEPSRIFTKLGCFLKKIVQNMLIHLFSEDNVYSSIPP