CuGenDBv2

Gene ID	HG10005553
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	Chr07:3579816..3580100
RNA-Seq Expression	HG10005553
Synteny	HG10005553
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

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GenBank top hits

e value

%identity

Alignment

TYK23276.1 uncharacterized protein E5676_scaffold142G003320 [Cucumis melo var. makuwa]

4.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

XP_008447827.1 PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo]

4.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

XP_008447830.1 PREDICTED: uncharacterized protein At5g43822 isoform X4 [Cucumis melo]

4.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

XP_016900442.1 PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis melo]

4.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

XP_038888522.1 uncharacterized protein At5g43822 isoform X2 [Benincasa hispida]

1.2e-23

90.91

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        +DRWDELQVRLISQFQN SSIIGR+Q+LQDPKNFGSLAGMDGIVDALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4X9 Uncharacterized protein

9.7e-24

90.91

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALL KQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

A0A1S3BHR8 uncharacterized protein At5g43822 isoform X4

2.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

A0A1S3BIA7 uncharacterized protein At5g43822 isoform X1

2.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

A0A1S4DWT4 uncharacterized protein At5g43822 isoform X2

2.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

A0A5D3DI19 Uncharacterized protein

2.0e-24

92.42

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        MDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTM
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

1.4e-08

45.45

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Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        M++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + S+K  M
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

1.0e-09

45.45

Show/hide

Query:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM
        M++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + S+K  M
Subjt:  MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

Sequences

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CDS sequence

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ATGGATCGCTGGGATGAACTTCAAGTTCGTTTAATTTCGCAGTTCCAAAATGCTTCCTCCATCATCGGGAGGCTGCAGATGCTTCAAGATCCTAAGAATTTTGGAAGTCT
GGCTGGCATGGATGGCATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTATCATGTCTATTAAGAAAACAATGTAA

mRNA sequence

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Protein sequence

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MDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTM

HG10005553 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome