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HG10005653 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005653
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsynaptotagmin-2-like
Genome locationChr07:4599997..4601526
RNA-Seq ExpressionHG10005653
SyntenyHG10005653
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008289 - lipid binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR045050 - Synaptotagmin, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144842.1 synaptotagmin-2 [Cucumis sativus]3.3e-4296.55Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLV GYFLFIYVQPNNVEDHEIRPLL+EDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

XP_008447962.1 PREDICTED: synaptotagmin-2-like [Cucumis melo]1.5e-4297.7Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLV GYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

XP_023554765.1 synaptotagmin-2-like isoform X1 [Cucurbita pepo subsp. pepo]4.4e-4296.55Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

XP_023554766.1 synaptotagmin-2-like isoform X2 [Cucurbita pepo subsp. pepo]4.4e-4296.55Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

XP_023554767.1 synaptotagmin-1-like isoform X3 [Cucurbita pepo subsp. pepo]4.4e-4296.55Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

TrEMBL top hitse value%identityAlignment
A0A0A0K0K9 SMP-LTD domain-containing protein1.6e-4296.55Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLV GYFLFIYVQPNNVEDHEIRPLL+EDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

A0A1S3BIM0 synaptotagmin-2-like7.3e-4397.7Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLV GYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

A0A6J1GKA1 synaptotagmin-1-like isoform X26.2e-4295.4Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

A0A6J1GLT6 synaptotagmin-2-like isoform X16.2e-4295.4Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

A0A6J1HXY4 synaptotagmin-1-like8.9e-4194.25Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFFGTILG FGFGVGISIGLVAGYFLFIYVQPNNVED EIRPL+EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNR I+YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

SwissProt top hitse value%identityAlignment
A0FGR8 Extended synaptotagmin-21.3e-0440Show/hide
Query:  EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYL
        EE  +RL     ++P WV  PD +R +WLN+ +++MWP++
Subjt:  EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYL

B6ETT4 Synaptotagmin-24.6e-2659.77Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MG   TILG+ GFG G +IG+V GY+LFIY Q  +VED EI+PL+E D+  +  M PEIP+WVK PD+DR+DWLN+ I +MWPY+DK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

Q3TZZ7 Extended synaptotagmin-27.6e-0540Show/hide
Query:  EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYL
        EE  +RL     ++P WV  PD +R +WLN+ +++MWP++
Subjt:  EEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYL

Q7XA06 Synaptotagmin-33.3e-2457.47Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF ++LG+ GF +GI IGL+ G+F+ IY QP++ E    RPL+E     L  +LP+IPLW+K PDY+RVDW N+FI YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

Q9SKR2 Synaptotagmin-11.0e-3068.97Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF TILG  GFGVGIS+GLV GY LF+Y+ PN+V+D EIR + ++D   + +MLPEIPLWVK PD+DRVDW+NRF+EYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

Arabidopsis top hitse value%identityAlignment
AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein3.2e-2759.77Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MG   TILG+ GFG G +IG+V GY+LFIY Q  +VED EI+PL+E D+  +  M PEIP+WVK PD+DR+DWLN+ I +MWPY+DK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

AT2G20990.1 synaptotagmin A7.5e-3268.97Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF TILG  GFGVGIS+GLV GY LF+Y+ PN+V+D EIR + ++D   + +MLPEIPLWVK PD+DRVDW+NRF+EYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

AT2G20990.2 synaptotagmin A7.5e-3268.97Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF TILG  GFGVGIS+GLV GY LF+Y+ PN+V+D EIR + ++D   + +MLPEIPLWVK PD+DRVDW+NRF+EYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

AT2G20990.3 synaptotagmin A7.5e-3268.97Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF TILG  GFGVGIS+GLV GY LF+Y+ PN+V+D EIR + ++D   + +MLPEIPLWVK PD+DRVDW+NRF+EYMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK

AT5G04220.2 Calcium-dependent lipid-binding (CaLB domain) family protein2.3e-2557.47Show/hide
Query:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK
        MGFF ++LG+ GF +GI IGL+ G+F+ IY QP++ E    RPL+E     L  +LP+IPLW+K PDY+RVDW N+FI YMWPYLDK
Subjt:  MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTTTCGGTACTATATTGGGCCTTTTTGGATTTGGAGTTGGGATCTCCATTGGCCTTGTTGCCGGTTACTTCCTTTTCATTTATGTTCAACCCAATAATGTTGA
GGATCATGAAATTCGTCCACTTCTCGAAGAGGACACAATAAGATTGCAGCAAATGCTTCCTGAGATACCACTGTGGGTGAAATGTCCAGACTATGATCGTGTTGACTGGC
TTAACAGGTTTATTGAATATATGTGGCCCTATCTTGATAAGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTTTCGGTACTATATTGGGCCTTTTTGGATTTGGAGTTGGGATCTCCATTGGCCTTGTTGCCGGTTACTTCCTTTTCATTTATGTTCAACCCAATAATGTTGA
GGATCATGAAATTCGTCCACTTCTCGAAGAGGACACAATAAGATTGCAGCAAATGCTTCCTGAGATACCACTGTGGGTGAAATGTCCAGACTATGATCGTGTTGACTGGC
TTAACAGGTTTATTGAATATATGTGGCCCTATCTTGATAAGGTTTAG
Protein sequenceShow/hide protein sequence
MGFFGTILGLFGFGVGISIGLVAGYFLFIYVQPNNVEDHEIRPLLEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDKV