; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10005739 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005739
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationChr07:5280971..5281531
RNA-Seq ExpressionHG10005739
SyntenyHG10005739
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]2.2e-8388.77Show/hide
Query:  MAAISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQ
        M A+SG SSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG+N SV   V +DLREMISPVLAVPISLVEDRIDGSLED  FL 
Subjt:  MAAISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQ

Query:  NQAEDGFAYGYNDAQEEDETDDD-DDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        NQAEDGFAYGY+DA+EEDE DDD +DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  NQAEDGFAYGYNDAQEEDETDDD-DDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]1.1e-8289.07Show/hide
Query:  SGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQAE
        S SSSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG+N SV   V +DLREMISPVLAVPISLVEDRIDGSLED  FL NQAE
Subjt:  SGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQAE

Query:  DGFAYGYNDAQEEDETDD-DDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        DGFAYGY+DA+EEDE DD ++DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DGFAYGYNDAQEEDETDD-DDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]1.2e-8690.91Show/hide
Query:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL
        M AISG SSSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG NCSV   V +DLREMISPVLAVPISLVEDRID SLED YFL
Subjt:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL

Query:  QNQAEDGFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
         NQAEDGFAYGYNDA+EEDE DDD+DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNQAEDGFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]2.1e-7879.59Show/hide
Query:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL
        M A+SG SSSSSSS+EF FYDDFEYEFVE++ERLSNWE L+A DADSEMDGNGGE++G+NC VVAR+ EDLRE+ISPV+ VPISL EDRI   LEDVYFL
Subjt:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL

Query:  QNQAEDGFAYGYNDAQE---------EDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        QN AEDGFAYGYNDA+E         +D+ DDD+DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNQAEDGFAYGYNDAQE---------EDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_038886897.1 uncharacterized protein LOC120077100 [Benincasa hispida]2.5e-7985.79Show/hide
Query:  MAAISGSSSSSS-SLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL
        M AISGSSSSSS S  FVF DDFEYEFVE+IERLSNWELLDAFDADSEMDGNG EEQG+NCSV  RV+EDLREMI     VPISLVEDRIDGSLED++FL
Subjt:  MAAISGSSSSSS-SLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL

Query:  QNQAEDGFAYGYNDA---QEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        QNQAED FAYGYND+   +EE+E D DDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNQAEDGFAYGYNDA---QEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein6.0e-8790.91Show/hide
Query:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL
        M AISG SSSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG NCSV   V +DLREMISPVLAVPISLVEDRID SLED YFL
Subjt:  MAAISG-SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFL

Query:  QNQAEDGFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
         NQAEDGFAYGYNDA+EEDE DDD+DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNQAEDGFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903565.2e-8389.07Show/hide
Query:  SGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQAE
        S SSSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG+N SV   V +DLREMISPVLAVPISLVEDRIDGSLED  FL NQAE
Subjt:  SGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQAE

Query:  DGFAYGYNDAQEEDETDD-DDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        DGFAYGY+DA+EEDE DD ++DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DGFAYGYNDAQEEDETDD-DDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like1.1e-8388.77Show/hide
Query:  MAAISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQ
        M A+SG SSSSSS+EFVFYDDFEYEFVE+IERLSNWELLDAFDADSEM GNGGEEQG+N SV   V +DLREMISPVLAVPISLVEDRIDGSLED  FL 
Subjt:  MAAISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQ

Query:  NQAEDGFAYGYNDAQEEDETDDD-DDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        NQAEDGFAYGY+DA+EEDE DDD +DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  NQAEDGFAYGYNDAQEEDETDDD-DDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I004 uncharacterized protein LOC1114684622.3e-7882.2Show/hide
Query:  AISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQ
        A S SSSSSSS+EF FYDDFEYEFVE++ERLSNWE L+A DADSEMDGNGGE++G+NC VVAR+ EDL EMISPV+ VPISL EDRI   LEDVYFLQN 
Subjt:  AISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQ

Query:  AEDGFAYGYNDAQEEDET-------DDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        AEDGFAYGYNDA EEDET       DDD+DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  AEDGFAYGYNDAQEEDET-------DDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I229 NAD-dependent protein deacetylase HST1-like8.4e-6571.14Show/hide
Query:  MAAISG---SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGG------EEQGQNCSVVARVHEDLREMISPVLAVPI-SLVEDRID
        M A+SG   SSSSSSS+EFVF+DD EYEFVEE+ERLSNWELLDA DAD E+DGNG       EE+ +NCSV   V +DLR     V+A+PI SLVE+RID
Subjt:  MAAISG---SSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGG------EEQGQNCSVVARVHEDLREMISPVLAVPI-SLVEDRID

Query:  GSLEDVYFLQNQAEDGFAYGYNDAQEED------ETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKH
        G  +DVY LQNQ EDGFAYG N+ +E++      + DDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKH
Subjt:  GSLEDVYFLQNQAEDGFAYGYNDAQEED------ETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKH

Query:  S
        S
Subjt:  S

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein2.9e-1761.54Show/hide
Query:  GFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK
        G  YG +   + +E  + DD +DLD+ELVP SVS K+GRQRMRKLGKR   K+Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GFAYGYNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein9.6e-0537.25Show/hide
Query:  DRIDGS--LEDVYFLQNQAEDGFAYGYN-DAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLG
        DR+DG      +  L   +      G N D  + DE DD D   DLDD+       + +  QR+RK GKR F K    K+  + ++  KPGCV GKHGL 
Subjt:  DRIDGS--LEDVYFLQNQAEDGFAYGYN-DAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLG

Query:  LK
        +K
Subjt:  LK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCATTTCTGGATCATCATCATCTTCTTCTTCTTTGGAATTCGTGTTTTACGATGATTTTGAATACGAATTTGTTGAAGAAATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCTGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGCAAAATTGCAGCGTTGTCGCTAGAGTTCATGAAGATCTTCGAGAAATGA
TTTCTCCTGTTCTTGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGATGTTTATTTCCTTCAGAATCAAGCGGAAGACGGTTTTGCGTACGGT
TATAACGATGCGCAGGAGGAGGATGAAACCGATGATGATGATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAAAGGAT
GAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAAC
ACAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCATTTCTGGATCATCATCATCTTCTTCTTCTTTGGAATTCGTGTTTTACGATGATTTTGAATACGAATTTGTTGAAGAAATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCTGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGCAAAATTGCAGCGTTGTCGCTAGAGTTCATGAAGATCTTCGAGAAATGA
TTTCTCCTGTTCTTGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGATGTTTATTTCCTTCAGAATCAAGCGGAAGACGGTTTTGCGTACGGT
TATAACGATGCGCAGGAGGAGGATGAAACCGATGATGATGATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAAAGGAT
GAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAAC
ACAGTTATTAG
Protein sequenceShow/hide protein sequence
MAAISGSSSSSSSLEFVFYDDFEYEFVEEIERLSNWELLDAFDADSEMDGNGGEEQGQNCSVVARVHEDLREMISPVLAVPISLVEDRIDGSLEDVYFLQNQAEDGFAYG
YNDAQEEDETDDDDDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY