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HG10005752 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005752
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHistone H2B
Genome locationChr07:5451144..5451383
RNA-Seq ExpressionHG10005752
SyntenyHG10005752
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VFQ76699.1 unnamed protein product [Cuscuta campestris]2.7e-1168.97Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
VFQ76700.1 unnamed protein product [Cuscuta campestris]3.6e-1170.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
VFQ76773.1 unnamed protein product [Cuscuta campestris]3.6e-1170.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
VFQ76774.1 unnamed protein product [Cuscuta campestris]2.7e-1168.97Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
XP_039144695.1 histone H2B-like [Dioscorea cayenensis subsp. rotundata]3.6e-1168.97Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        IK+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
TrEMBL top hitse value%identityAlignment
A0A3P6CZA8 Histone H2B2.3e-1163.38Show/hide
Query:  KKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+AI   +  K+R ++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
A0A484LJW9 Histone H2B1.7e-1170.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
A0A484LJX0 Histone H2B1.7e-1170.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
A0A484LKF1 Histone H2B1.3e-1168.97Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
A0A484LKG6 Histone H2B1.3e-1168.97Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        +K+ I   +  IFKVL+QVHPDIGIS++A+ +IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
SwissProt top hitse value%identityAlignment
O22582 Histone H2B1.4e-1367.24Show/hide
Query:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        +K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  IKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
O65819 Histone H2B.3 (Fragment)2.3e-1368.42Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEAS+LARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
P40283 Histone H2B.111.0e-1370.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
Q9LQQ4 Histone H2B.11.8e-1368.42Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQE+SKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
Q9SI96 Histone H2B.31.8e-1360Show/hide
Query:  KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ K+     V   K+R+++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein1.3e-1468.42Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQE+SKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
AT2G28720.1 Histone superfamily protein1.3e-1460Show/hide
Query:  KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ K+     V   K+R+++S    +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KVRKKKAINLVNLIKERIRES----ECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
AT2G37470.1 Histone superfamily protein2.8e-1466.67Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPD+GIS +A+  IMNSFINDIF+K+AQE+SKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
AT3G53650.1 Histone superfamily protein2.8e-1468.42Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ I   +  IFKVL+QVHPDIGIS +A+  IMNSFINDIF+K+AQE+S+LARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
AT5G59910.1 Histone superfamily protein7.4e-1570.18Show/hide
Query:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK
        K+ +   +  IFKVL+QVHPDIGIS++A+  IMNSFINDIF+K+AQEASKLARYNKK
Subjt:  KERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGTAAGAAAAAAAAAAGCAATCAATTTGGTGAACTTAATTAAGGAGAGAATTAGAGAATCAGAATGTGAAATTTTCAAGGTTTTGGAGCAAGTTCATCCTGA
CATTGGAATCTCCAACAGGGCAATAGACATAATAATGAACAGTTTCATCAACGATATCTTCAAGAAAATTGCTCAAGAGGCTTCGAAATTGGCAAGATATAACAAGAAAT
CTATGAGTGTATCGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAAGTAAGAAAAAAAAAAGCAATCAATTTGGTGAACTTAATTAAGGAGAGAATTAGAGAATCAGAATGTGAAATTTTCAAGGTTTTGGAGCAAGTTCATCCTGA
CATTGGAATCTCCAACAGGGCAATAGACATAATAATGAACAGTTTCATCAACGATATCTTCAAGAAAATTGCTCAAGAGGCTTCGAAATTGGCAAGATATAACAAGAAAT
CTATGAGTGTATCGAACTAA
Protein sequenceShow/hide protein sequence
MVKVRKKKAINLVNLIKERIRESECEIFKVLEQVHPDIGISNRAIDIIMNSFINDIFKKIAQEASKLARYNKKSMSVSN