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HG10005756 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005756
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr07:5480091..5480288
RNA-Seq ExpressionHG10005756
SyntenyHG10005756
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040038.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-0452.17Show/hide
Query:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        NR SFW EL DL    SP WL   DFNV R+S+ET++  P  +SM+
Subjt:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

KAA0067709.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0454.35Show/hide
Query:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        NR+SFW EL DL  + SP WL   DFNV R+S+ET+   P H SM+
Subjt:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]8.0e-0959.57Show/hide
Query:  EENRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSM
        ++ R  FW EL+DLNGL  PIWL GEDFN+YRWS+ET+S+ P    M
Subjt:  EENRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSM

TrEMBL top hitse value%identityAlignment
A0A5A7TAQ1 LINE-1 retrotransposable element ORF2 protein3.8e-0452.17Show/hide
Query:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        NR SFW EL DL    SP WL   DFNV R+S+ET++  P  +SM+
Subjt:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

A0A5A7TMG5 LINE-1 retrotransposable element ORF2 protein6.4e-0454.35Show/hide
Query:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        NR+SFW EL DL    SPIWL   DFNV R+S ET++    H SM+
Subjt:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

A0A5A7VRD2 LINE-1 retrotransposable element ORF2 protein9.9e-0554.35Show/hide
Query:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        NR+SFW EL DL  + SP WL   DFNV R+S+ET+   P H SM+
Subjt:  NRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

A0A6J1CVN2 uncharacterized protein LOC1110146573.9e-0959.57Show/hide
Query:  EENRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSM
        ++ R  FW EL+DLNGL  PIWL GEDFN+YRWS+ET+S+ P    M
Subjt:  EENRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSM

A5C481 Reverse transcriptase domain-containing protein6.4e-0451.11Show/hide
Query:  RSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK
        R  FW+ELYD+ GLS P+W  G DFNV R S+E    + L +SM+
Subjt:  RSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCCTAGTGGCTTACTAGCATATATGGTCCTGCAGCTAGAAGAAAATAGATCTTCTTTTTGGATGGAGCTTTATGATCTTAATGGGTTATCTTCCCCTATTTG
GCTTCGTGGAGAAGATTTTAATGTTTATCGATGGAGCAATGAAACCACTTCTTCAGCACCCCTTCACAACAGTATGAAAATTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTCCTAGTGGCTTACTAGCATATATGGTCCTGCAGCTAGAAGAAAATAGATCTTCTTTTTGGATGGAGCTTTATGATCTTAATGGGTTATCTTCCCCTATTTG
GCTTCGTGGAGAAGATTTTAATGTTTATCGATGGAGCAATGAAACCACTTCTTCAGCACCCCTTCACAACAGTATGAAAATTCAATAA
Protein sequenceShow/hide protein sequence
MASPSGLLAYMVLQLEENRSSFWMELYDLNGLSSPIWLRGEDFNVYRWSNETTSSAPLHNSMKIQ