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HG10005760 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005760
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RADIALIS-like 3
Genome locationChr07:5616987..5618364
RNA-Seq ExpressionHG10005760
SyntenyHG10005760
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]8.1e-4291.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]2.8e-4291.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]2.6e-4089.58Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIA  VGGKSADEVKRHYE+LLEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]1.8e-4191.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA  VGGKSADEVKRHYE+LLEDLRRIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]3.9e-4495.83Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIA  VGGKS DEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein3.9e-4291.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 31.4e-4291.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A6J1C2H2 protein RADIALIS-like 32.8e-4087Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWQNIA  VGGKSADEVKRHY++LLEDLRRIESGRVPIPNYR      GN DEELRLLKYLKL+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ

A0A6J1GKW1 protein RADIALIS-like 31.3e-4090.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA  VGGKSADEVKRHYE+LLEDL RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 31.3e-4089.58Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIA  VGGKSADEVKRHYE+LLEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.7e-2455.45Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A VVGGK+ +EVKRHYE+L++D+  IE+G VP PNYR  GG   G   +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 62.6e-2252Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS4.4e-2254.22Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-GGGNRDEELRLLKYLKLQ
        W+AK+NK FE+ALA+YDK+TP+RW N+A  V G++ +EVK+HYE+L+ED++ IESG+VP PNYR  GGN   + +  + LK++
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-GGGNRDEELRLLKYLKLQ

Q6NNN0 Protein RADIALIS-like 35.2e-2359.76Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN
        MAS+S+       +WT K+NKLFE+ALA YD++TP+RW N+A  VGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN

Q8GW75 Protein RADIALIS-like 56.1e-2452.43Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A  VG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.3e-2552.43Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A  VG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 63.1e-2360.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 61.8e-2352Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL

AT2G18328.1 RAD-like 46.5e-2160.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA  VGGKS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 11.9e-2555.45Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A VVGGK+ +EVKRHYE+L++D+  IE+G VP PNYR  GG   G   +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAGCTCTTTGAAGCAACAACGACCGGAGACGACGTGGACGGCGAAGCAAAACAAGTTGTTCGAAAAGGCATTGGCGTTGTACGACAAAGAGACGCCTGAGAG
ATGGCAAAATATCGCCACGGTGGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACACTACGAAGTACTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGAGGCGGCGGCAATAGAGATGAAGAGTTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAAGCTCTTTGAAGCAACAACGACCGGAGACGACGTGGACGGCGAAGCAAAACAAGTTGTTCGAAAAGGCATTGGCGTTGTACGACAAAGAGACGCCTGAGAG
ATGGCAAAATATCGCCACGGTGGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACACTACGAAGTACTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGAGGCGGCGGCAATAGAGATGAAGAGTTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ