; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10005763 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005763
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein RADIALIS-like 1
Genome locationChr07:5650912..5651184
RNA-Seq ExpressionHG10005763
SyntenyHG10005763
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.5e-3795.18Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGN
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSG G+QGN
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGN

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]1.3e-3691.76Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNIS
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSGGG+Q  +S
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNIS

KAG7011712.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3689.89Show/hide
Query:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNISFLI
        MASMSSHGS GTWT KQNKAFE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLVEDVKFIESGQVP+PYRTSGGG++GNISF I
Subjt:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNISFLI

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]5.7e-3795.12Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSGGG+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]7.4e-3795.12Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSG G+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein2.7e-3795.12Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSGGG+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG

A0A1S3BFW6 protein RADIALIS-like 13.6e-3795.12Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSG G+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG

A0A5A7SYK4 Protein RADIALIS-like 17.2e-3895.18Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGN
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVP+PYRTSG G+QGN
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGN

A0A6J1C385 protein RADIALIS-like 16.7e-3689.41Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNIS
        MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV +PYRTSGGGS GN++
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNIS

A0A6J1GJE9 protein RADIALIS-like 12.8e-3490.36Show/hide
Query:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG
        MASMSSHGS GTWT KQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVP+PYRTSGGG+QG
Subjt:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.5e-2971.76Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQGNIS
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VP+P YRTSGG + G +S
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQGNIS

Q58FS3 Transcription factor RADIALIS3.0e-2571.05Show/hide
Query:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGG
        S+ GSG  W+AK+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VP+P YRT+GG
Subjt:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGG

Q6NNN0 Protein RADIALIS-like 32.2e-2366.67Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSG
        MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IESG+ P+P YR++G
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSG

Q8GW75 Protein RADIALIS-like 51.4e-2265.85Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   GS+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ

Q9SIJ5 Protein RADIALIS-like 21.6e-2672.15Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGS
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VP+P Y+T+ G S
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.0e-2365.85Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   GS+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ

AT1G75250.1 RAD-like 66.5e-2364.63Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T    S+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ

AT1G75250.2 RAD-like 66.5e-2364.63Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T    S+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQ

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2772.15Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGS
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VP+P Y+T+ G S
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGS

AT4G39250.1 RAD-like 13.2e-3071.76Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQGNIS
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VP+P YRTSGG + G +S
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYP-YRTSGGGSQGNIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTACCCTTATC
GAACCTCCGGAGGCGGTAGCCAAGGTAATATAAGCTTTCTGATTTATTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTACCCTTATC
GAACCTCCGGAGGCGGTAGCCAAGGTAATATAAGCTTTCTGATTTATTGGTGA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPYPYRTSGGGSQGNISFLIYW