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HG10005765 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005765
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RADIALIS-like 1
Genome locationChr07:5687934..5688179
RNA-Seq ExpressionHG10005765
SyntenyHG10005765
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]9.9e-3391.25Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]7.6e-3391.25Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MAS+SAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR+N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.9e-3290Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]5.8e-3393.75Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFEEALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSR +
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]3.5e-3085.9Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSR
        MASMSAHGSAG WTAKQNKAFE+ALA+YDQDTP+RWLNVAKAIGGKTEEEVKRHYQ+L++DVK IESG+VPFPY  SR
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSR

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein3.7e-3391.25Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MAS+SAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR+N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

A0A1S3BGF6 protein RADIALIS-like 11.4e-3290Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFE+ALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

A0A5A7SYM4 Protein RADIALIS-like 14.8e-3391.25Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFEEALAMYD+DTPDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

A0A6J1GJG0 protein RADIALIS-like 12.8e-3393.75Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFEEALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSR +
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

A0A6J1IA78 protein RADIALIS-like 12.8e-3393.75Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN
        MASMSAHGS G WTAKQNKAFEEALAMYDQD PDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSR +
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRAN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.1e-2470.13Show/hide
Query:  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSS
        +SMS+  S+G WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY++LV+D+  IE+G VPFP YR+S
Subjt:  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSS

Q1A173 Protein RADIALIS-like 66.9e-2160.98Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN
        MAS ++  S   WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P Y++  +N+
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN

Q58FS3 Transcription factor RADIALIS2.3e-2466.23Show/hide
Query:  SAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRAN
        S  GS   W+AK+NKAFE ALA+YD+DTPDRW NVA+A+ G+T EEVK+HY++LVED+K+IESGKVPFP YR++  N
Subjt:  SAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRAN

Q6NNN0 Protein RADIALIS-like 33.1e-2161.73Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRANN
        MAS S   SA  WT K+NK FE ALA YDQDTPDRW NVA+A+GGK+ EEV+RHY++L+ DV  IESG+ P P   S  NN
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRANN

Q9SIJ5 Protein RADIALIS-like 23.3e-2365Show/hide
Query:  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN
        SMS++GS G WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y +LV D++ IE+G VPFP Y+++  N+
Subjt:  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.5e-2164.38Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP
        MAS S+  S+  WT+KQNK FE ALA+YD+DTPDRW NVAKA+G K+ EEVKRHY +LVED+ +IE   VP P
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP

AT1G75250.1 RAD-like 64.9e-2260.98Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN
        MAS ++  S   WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P Y++  +N+
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN

AT1G75250.2 RAD-like 64.9e-2260.98Show/hide
Query:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN
        MAS ++  S   WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P Y++  +N+
Subjt:  MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN

AT2G21650.1 Homeodomain-like superfamily protein2.4e-2465Show/hide
Query:  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN
        SMS++GS G WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y +LV D++ IE+G VPFP Y+++  N+
Subjt:  SMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRANN

AT4G39250.1 RAD-like 13.6e-2570.13Show/hide
Query:  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSS
        +SMS+  S+G WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHY++LV+D+  IE+G VPFP YR+S
Subjt:  ASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGTTCTGCAGGTCAATGGACTGCAAAGCAAAACAAAGCATTTGAAGAAGCTTTGGCAATGTATGATCAAGACACACCTGATAGATGGTT
GAATGTTGCAAAGGCCATTGGTGGAAAAACTGAGGAGGAAGTTAAAAGGCATTACCAAGTTCTTGTGGAAGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCTT
ACAGAAGTTCAAGAGCCAATAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCAGCTCATGGTTCTGCAGGTCAATGGACTGCAAAGCAAAACAAAGCATTTGAAGAAGCTTTGGCAATGTATGATCAAGACACACCTGATAGATGGTT
GAATGTTGCAAAGGCCATTGGTGGAAAAACTGAGGAGGAAGTTAAAAGGCATTACCAAGTTCTTGTGGAAGATGTTAAACATATTGAGTCTGGCAAAGTTCCTTTTCCTT
ACAGAAGTTCAAGAGCCAATAATTAG
Protein sequenceShow/hide protein sequence
MASMSAHGSAGQWTAKQNKAFEEALAMYDQDTPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRANN