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HG10005766 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005766
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RADIALIS-like 1
Genome locationChr07:5695304..5701626
RNA-Seq ExpressionHG10005766
SyntenyHG10005766
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011710.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2088.71Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MASMSA HGSSAWTA ENKAFEKALAV+D+DTPERW+NVAKAIGGKTE+EVKRHYQLLV+DV
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.2e-2187.3Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN
        MASMSA HGS+ WTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDVN
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]1.4e-2087.1Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MASMS +HGSSAWTA +NKAFEKALAVYD+DTPERWLNVAKA+GGKT EEVKRHY+LLVEDV
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]4.9e-2178.95Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS
        MASMSA HGSSAWTA ENKAFEKALAV+D+DTPERW+NVAKAIGGKTE+EVKRHYQLLV+DV    S   N P RS
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]1.1e-2068.6Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNASAAFNSPPRSPLSSPSYTSKSG
        MASMS +HGS+AWTAM+NK FEKALAVYD+DTPERWLNVAKA+G KTEEEVKRHYQLL++DV    + N P   P SS     K G
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNASAAFNSPPRSPLSSPSYTSKSG

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein5.6e-2392.06Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN
        MASMSA HGSSAWTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+EDVN
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN

A0A1S3BGF0 protein RADIALIS-like 11.1e-2187.3Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN
        MASMSA HGS+ WTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDVN
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN

A0A6J1C385 protein RADIALIS-like 16.9e-2187.1Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MASMS +HGSSAWTA +NKAFEKALAVYD+DTPERWLNVAKA+GGKT EEVKRHY+LLVEDV
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

A0A6J1GKV1 protein RADIALIS-like 12.4e-2178.95Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS
        MASMSA HGSSAWTA ENKAFEKALAV+D+DTPERW+NVAKAIGGKTE+EVKRHYQLLV+DV    S   N P RS
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS

A0A6J1I8Y0 protein RADIALIS-like 16.9e-2177.63Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS
        MASMSA HGSSAWTA ENKAFEKALAV+D+DTP+RW+NVAKAIGGKTE+EVKRHYQLLV DV    S   N P RS
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN--ASAAFNSPPRS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.3e-1866.15Show/hide
Query:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA
        MAS S ++  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+N+
Subjt:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA

Q58FS3 Transcription factor RADIALIS1.7e-1665Show/hide
Query:  MSATHGSS-AWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        M++T GS   W+A ENKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+
Subjt:  MSATHGSS-AWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

Q6NNN0 Protein RADIALIS-like 33.8e-1663.49Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN
        MAS S +  S++WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+RHY+LL+ DVN
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVN

Q8GW75 Protein RADIALIS-like 53.8e-1666.13Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MAS S+   SS+WT+ +NK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

Q9SIJ5 Protein RADIALIS-like 21.7e-1663.08Show/hide
Query:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA
        MAS S +++GS +WT  +NKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D+ +
Subjt:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.7e-1766.13Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MAS S+   SS+WT+ +NK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

AT1G75250.1 RAD-like 67.8e-1767.74Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MAS S +   S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

AT1G75250.2 RAD-like 67.8e-1767.74Show/hide
Query:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV
        MAS S +   S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+
Subjt:  MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV

AT2G21650.1 Homeodomain-like superfamily protein1.2e-1763.08Show/hide
Query:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA
        MAS S +++GS +WT  +NKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D+ +
Subjt:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA

AT4G39250.1 RAD-like 13.7e-1966.15Show/hide
Query:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA
        MAS S ++  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+N+
Subjt:  MASMS-ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTACTCATGGCTCTAGTGCATGGACTGCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATGAAGACACACCTGAGAGA
TGGCTCAATGTTGCTAAAGCCATTGGTGGAAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTTGAAGATGTCAATGCTTCCGCTGCATTTAATTCA
CCACCCAGATCTCCATTGTCGTCGCCGTCATACACCTCCAAATCCGGCGATCAGCCGCCTCGGACGGTTGTACCGGCAACTCCACCACCAACTCCGTCCAATGTT
CTGCCCCCATCAACACCAAGTCCTCCATCTCCTACAAAGTCTCCTCAATCTCCTTGGTTGGACGAAATTCGTCGCCCAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCTACTCATGGCTCTAGTGCATGGACTGCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATGAAGACACACCTGAGAGA
TGGCTCAATGTTGCTAAAGCCATTGGTGGAAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTTGAAGATGTCAATGCTTCCGCTGCATTTAATTCA
CCACCCAGATCTCCATTGTCGTCGCCGTCATACACCTCCAAATCCGGCGATCAGCCGCCTCGGACGGTTGTACCGGCAACTCCACCACCAACTCCGTCCAATGTT
CTGCCCCCATCAACACCAAGTCCTCCATCTCCTACAAAGTCTCCTCAATCTCCTTGGTTGGACGAAATTCGTCGCCCAATTTAG
Protein sequenceShow/hide protein sequence
MASMSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVNASAAFNSPPRSPLSSPSYTSKSGDQPPRTVVPATPPPTPSNV
LPPSTPSPPSPTKSPQSPWLDEIRRPI