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HG10005767 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005767
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein RADIALIS-like 1
Genome locationChr07:5717592..5717943
RNA-Seq ExpressionHG10005767
SyntenyHG10005767
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3084.71Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.3e-3083.91Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR

XP_011659078.1 protein RADIALIS-like 2 [Cucumis sativus]2.3e-3083.91Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR
        M SMSSHGS NAWT MQNKTFE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS+D LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]1.7e-3084.71Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]3.4e-3490.59Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR
        M SMSSHGS NAWTAMQNKTFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL+DVK IESGNVPFPYPSSSD LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 21.1e-3083.91Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR

A0A5D3D8F6 Protein RADIALIS-like 21.1e-3083.91Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQR

A0A6J1C6U4 protein RADIALIS-like 11.5e-2783.54Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSD
        M SMSS GS +AWTAMQNK FE ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLL+EDVK IESG+VPFPY +S+D
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSD

A0A6J1GK35 protein RADIALIS-like 18.4e-3184.71Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR

A0A6J1I517 protein RADIALIS-like 12.5e-3083.53Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAK VGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+R
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.3e-2066.67Show/hide
Query:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D+  IE+G+VPFP
Subjt:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q1A173 Protein RADIALIS-like 62.1e-1865.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q58FS3 Transcription factor RADIALIS1.3e-2065.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        S+ GS   W+A +NK FERALAVYD+DTP+RW NVA+AV  +T EEVK HY++L+ED+K IESG VPFP
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q8GW75 Protein RADIALIS-like 51.6e-1863.77Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  IE   VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q9SIJ5 Protein RADIALIS-like 21.0e-2060Show/hide
Query:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQRV
        SMSS+GS  +WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D++ IE+G+VPFP Y +++ +  R R+
Subjt:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQRV

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-1963.77Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  IE   VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

AT1G75250.1 RAD-like 61.5e-1965.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

AT1G75250.2 RAD-like 61.5e-1965.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

AT2G21650.1 Homeodomain-like superfamily protein7.1e-2260Show/hide
Query:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQRV
        SMSS+GS  +WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D++ IE+G+VPFP Y +++ +  R R+
Subjt:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQRV

AT4G39250.1 RAD-like 19.2e-2266.67Show/hide
Query:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D+  IE+G+VPFP
Subjt:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCT
GAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCT
ATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGTTTATGTGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCT
GAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCT
ATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGTTTATGTGAAATAA
Protein sequenceShow/hide protein sequence
MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRVYVK