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HG10005824 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005824
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H protein
Genome locationChr07:6513915..6514421
RNA-Seq ExpressionHG10005824
SyntenyHG10005824
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5445494.1 hypothetical protein F2P56_034541 [Juglans regia]5.5e-0935.88Show/hide
Query:  PGGGEMKLNVDTLCVSNVG-VGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE
        P  G +KLNVD +  ++VG  G+G I+ + +G VV  A K E+        E +A L  +Q+   L ++ L VEFD   LV+ +Q     + + G +L++
Subjt:  PGGGEMKLNVDTLCVSNVG-VGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE

Query:  IRDWMGKINVRGLFFILCACNGVAHSLARWA
        +RD M   N   +  +    NGVAHSLAR+A
Subjt:  IRDWMGKINVRGLFFILCACNGVAHSLARWA

XP_030485460.1 uncharacterized protein LOC115702143 [Cannabis sativa]7.1e-0933.87Show/hide
Query:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK
        +N D +L     G GL A+I D +G +V  A  F  G ++VL AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+    K
Subjt:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK

Query:  INVRGLFFILCACNGVAHSLARWA
               F   +CN VA+SLA+W+
Subjt:  INVRGLFFILCACNGVAHSLARWA

XP_042974660.1 uncharacterized protein LOC122306292 [Carya illinoinensis]6.5e-1032.82Show/hide
Query:  SPGGGEMKLNVDTLCVSNVGV-GLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILE
        SP  G  KLNVD    SN  V G+G I+ +S+G V+ +A K E  V+  +  EALA++  +Q+  DL + NL +E DS  +V+          + G ++ 
Subjt:  SPGGGEMKLNVDTLCVSNVGV-GLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILE

Query:  EIRDWMGKINVRGLFFILCACNGVAHSLARW
        E ++ + +     +  +  +CN  AHSLA++
Subjt:  EIRDWMGKINVRGLFFILCACNGVAHSLARW

XP_042979948.1 uncharacterized protein LOC122310131 [Carya illinoinensis]2.5e-0933.59Show/hide
Query:  PGGGEMKLNVDTLCVSN-VGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE
        P  G  KLNVD     N    G+GAI+ DS+G V+  A+K E  V +  + E LA+L  +Q+   L + +L +E D+  LV+ +Q        +G ++ +
Subjt:  PGGGEMKLNVDTLCVSN-VGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE

Query:  IRDWMGKINVRGLFFILCACNGVAHSLARWA
         ++ M    V  + + + +CN VAH LAR A
Subjt:  IRDWMGKINVRGLFFILCACNGVAHSLARWA

XP_042988698.1 uncharacterized protein LOC122316231 [Carya illinoinensis]1.4e-0935.11Show/hide
Query:  SPGGGEMKLNVDTLCVSNVGV-GLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILE
        SP  G  KLNVD    SN  V G GAI+ DS+G V+ +A K E  ++ V+  EALA+L  +Q    L + NL +E DS  +VR          + G ++ 
Subjt:  SPGGGEMKLNVDTLCVSNVGV-GLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILE

Query:  EIRDWMGKINVRGLFFILCACNGVAHSLARW
        E ++ M +  +  +  +  + N  AHSLA++
Subjt:  EIRDWMGKINVRGLFFILCACNGVAHSLARW

TrEMBL top hitse value%identityAlignment
A0A7J6GCK1 Uncharacterized protein (Fragment)4.5e-0933.06Show/hide
Query:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK
        +N D +L     G GL A+I D +G +V  A  F  G +++L AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+    K
Subjt:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK

Query:  INVRGLFFILCACNGVAHSLARWA
               F   +CN VA+SLA+W+
Subjt:  INVRGLFFILCACNGVAHSLARWA

A0A7J6HCI0 Uncharacterized protein4.5e-0933.06Show/hide
Query:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK
        +N D +L     G GL A+I D +G +V  A  F  G +++L AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+    K
Subjt:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK

Query:  INVRGLFFILCACNGVAHSLARWA
               F   +CN VA+SLA+W+
Subjt:  INVRGLFFILCACNGVAHSLARWA

A0A7J6HML3 Uncharacterized protein3.5e-0933.87Show/hide
Query:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK
        +N D +L     G GL A+I D +G +V  A  F  G ++VL AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+    K
Subjt:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK

Query:  INVRGLFFILCACNGVAHSLARWA
               F   +CN VA+SLA+W+
Subjt:  INVRGLFFILCACNGVAHSLARWA

A0A7J6I5R5 Uncharacterized protein3.5e-0933.61Show/hide
Query:  TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKINVRG
        +L     G GL A+I D +G +V  A  F  G ++VL AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+  + K     
Subjt:  TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKINVRG

Query:  LFFILCACNGVAHSLARWA
          F   +CN VA+SLA+W+
Subjt:  LFFILCACNGVAHSLARWA

A0A803QSC8 Uncharacterized protein3.5e-0933.87Show/hide
Query:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK
        +N D +L     G GL A+I D +G +V  A  F  G ++VL AEA A+   IQ+A    +TN  V  DSH L++ + + +      G ++++I+    K
Subjt:  LNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGK

Query:  INVRGLFFILCACNGVAHSLARWA
               F   +CN VA+SLA+W+
Subjt:  INVRGLFFILCACNGVAHSLARWA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein5.1e-0531.43Show/hide
Query:  GAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKINVRGLFFILCACNGV
        G  I +  G++V   N   +     L AEAL  L  +Q+ +   L  +W E DS  LV +I N    +  +G ++ +IR WM K+    L F+    N  
Subjt:  GAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKINVRGLFFILCACNGV

Query:  AHSLA
        A +LA
Subjt:  AHSLA

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.4e-0429.45Show/hide
Query:  PGGGEMKLNVDTLCVSN----VGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGI
        PG   +K N D   VSN       GL  II +SQG  +       +G   +  AE  AL++ IQ A+DL    +  E D+  + R+I+N    N  +   
Subjt:  PGGGEMKLNVDTLCVSN----VGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGI

Query:  LEEIRDWMGKINVRGLFFILCACNGVAHSLARWASTNRVDGQRSIVVHRWLGHFVELDAYFCN
        LE I+ W          F     N     LA+ A  N ++        R+L  FV  DA   N
Subjt:  LEEIRDWMGKINVRGLFFILCACNGVAHSLARWASTNRVDGQRSIVVHRWLGHFVELDAYFCN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.6e-0427.48Show/hide
Query:  PGGGEMKLNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE
        PG  ++K N D +    N   GLG I+ +SQG V++      +G +    AE   L++ IQ ++      +  E D+  + R+I N    N  +   L+ 
Subjt:  PGGGEMKLNVD-TLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEE

Query:  IRDWMGKINVRGLFFILCACNGVAHSLARWA
        I+ W+         F     NG A  LA+ A
Subjt:  IRDWMGKINVRGLFFILCACNGVAHSLARWA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATACTCTATGCGTGTCTAATGTGGGAGTGGGGTTGGGGGCTATTATTCCTGACTCTCAAGGAAATGTGGTGAA
AACTGCGAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTGCTGAAGCGTTAGCACTCTTGTTTAGAATTCAAATGGCCTTTGATTTGCGTCTAACTAATTTATGGG
TAGAATTTGATTCTCATAAATTAGTTAGAGTCATTCAAAATTATTCTATGCAAAATTATTCAATTGGTGGAATTCTAGAAGAGATTAGAGACTGGATGGGTAAAATTAAT
GTTAGGGGTCTCTTTTTTATTTTGTGTGCTTGTAATGGGGTCGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGTCGATGGTCAACGGTCTATTGTGGTTCATAG
ATGGCTTGGTCATTTTGTTGAGCTTGATGCTTATTTTTGTAATCCACTAGACGGTATTTATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATACTCTATGCGTGTCTAATGTGGGAGTGGGGTTGGGGGCTATTATTCCTGACTCTCAAGGAAATGTGGTGAA
AACTGCGAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTGCTGAAGCGTTAGCACTCTTGTTTAGAATTCAAATGGCCTTTGATTTGCGTCTAACTAATTTATGGG
TAGAATTTGATTCTCATAAATTAGTTAGAGTCATTCAAAATTATTCTATGCAAAATTATTCAATTGGTGGAATTCTAGAAGAGATTAGAGACTGGATGGGTAAAATTAAT
GTTAGGGGTCTCTTTTTTATTTTGTGTGCTTGTAATGGGGTCGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGTCGATGGTCAACGGTCTATTGTGGTTCATAG
ATGGCTTGGTCATTTTGTTGAGCTTGATGCTTATTTTTGTAATCCACTAGACGGTATTTATGTTTGA
Protein sequenceShow/hide protein sequence
MSPGGGEMKLNVDTLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKIN
VRGLFFILCACNGVAHSLARWASTNRVDGQRSIVVHRWLGHFVELDAYFCNPLDGIYV