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HG10005857 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005857
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr07:7102830..7103144
RNA-Seq ExpressionHG10005857
SyntenyHG10005857
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.1e-1545.83Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +  + GSHL+ W  VT PKE G +GI K+ ITN +LL KW+WR+Y +  SLWR+LI  KY  +    +PS    +S KA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.4e-1548.81Show/hide
Query:  GSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        GSHL+ W  VT PKE GG+GI ++ +TN +LL KW+WR++ +  SLWR+LI  KY  +    LPS    +SSKA W  I+  ID
Subjt:  GSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-1444.79Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +    GSHL+ W  VT PKE GG+GI ++ +TN +LL K +WR+Y +  SLWR+LI  KY  +    +PS    +SSKA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.9e-1646.88Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +    GSHL+ W  VT PKE GG+GI ++ +TN +LL KW+WR+Y +  SLWR+LI  KY  +    LPS    +SSKA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-1646.88Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +  + GSHL+ W  VT PKE GG+GI ++ ITN +LL KW+WR+Y +  SLWR+LI  KY  +    LPS    +SSKA W  I+  I+
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
TrEMBL top hitse value%identityAlignment
A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein1.7e-1444.79Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +    GSHL+ W  VT PKE GG+GI ++ +TN +LL K +WR+Y +  SLWR+LI  KY  +    +PS    +SSKA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein2.6e-1548.81Show/hide
Query:  GSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        GSHL+ W  VT PKE GG+GI ++ +TN +LL KW+WR++ +  SLWR+LI  KY  +    LPS    +SSKA W  I+  ID
Subjt:  GSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein2.4e-1646.88Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +    GSHL+ W  VT PKE GG+GI ++ +TN +LL KW+WR+Y +  SLWR+LI  KY  +    LPS    +SSKA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein1.8e-1646.88Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +  + GSHL+ W  VT PKE GG+GI ++ ITN +LL KW+WR+Y +  SLWR+LI  KY  +    LPS    +SSKA W  I+  I+
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein2.0e-1545.83Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
        R+FL + +  + GSHL+ W  VT PKE G +GI K+ ITN +LL KW+WR+Y +  SLWR+LI  KY  +    +PS    +S KA W  I+  ID
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLID
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.3e-0736.76Show/hide
Query:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYN
        R FL   T +    HLV+W  V  PK+ GG+G++     N +L+ K  WR  Q+  SLW  +++ KY+
Subjt:  RDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYN
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.2e-0527.78Show/hide
Query:  MRDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQS
        + DF   + ++  G H   W++++  K  GG+G K +   N +LL K +WR   +  SL  ++ +++Y  +S
Subjt:  MRDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTTTCTAGGGGAAGATACTGAGAAAAATGGTGGATCTCATCTAGTTCGTTGGGAATATGTTACTCTTCCAAAAGAGAACGGTGGCATGGGAATCAAAAAGGT
GACAATCACCAATGCATCTTTGTTACCTAAATGGATTTGGAGATTTTATCAAAAGTCATATAGCCTGTGGAGACAGTTGATTGAAACTAAATACAATAGGCAATCGACTG
ATACCCTCCCTTCTTTGTGTCGATACAACAGCTCAAAAGCCTATTGGTTTCACATTCTAAAGCTTATTGATATAGTGGAAACCTTTATGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTTTCTAGGGGAAGATACTGAGAAAAATGGTGGATCTCATCTAGTTCGTTGGGAATATGTTACTCTTCCAAAAGAGAACGGTGGCATGGGAATCAAAAAGGT
GACAATCACCAATGCATCTTTGTTACCTAAATGGATTTGGAGATTTTATCAAAAGTCATATAGCCTGTGGAGACAGTTGATTGAAACTAAATACAATAGGCAATCGACTG
ATACCCTCCCTTCTTTGTGTCGATACAACAGCTCAAAAGCCTATTGGTTTCACATTCTAAAGCTTATTGATATAGTGGAAACCTTTATGCACTAG
Protein sequenceShow/hide protein sequence
MRDFLGEDTEKNGGSHLVRWEYVTLPKENGGMGIKKVTITNASLLPKWIWRFYQKSYSLWRQLIETKYNRQSTDTLPSLCRYNSSKAYWFHILKLIDIVETFMH