CuGenDBv2

Gene ID	HG10005861
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Embryo defective
Genome location	Chr07:7199007..7206444
RNA-Seq Expression	HG10005861
Synteny	HG10005861
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0071472 - cellular response to salt stress (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7022436.1 hypothetical protein SDJN02_16167 [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-86

88.14

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Query:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM
        SP+C HVVSLKPHKR QNARS+VSCAMNM+AGQSDD GR SWDSLKD VKKLWD+SPEPVKCFPWNEAL+NFIQLIADLIL+VIKYL +PLL VTS+SEM
Subjt:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM

Query:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        SYCAHEKKLL+VPFP IIGFSVAE MRQTALSLSPILKDLEVPWHLITIA+FFTLIKLPGPYYPYWGRIF+PH ANG
Subjt:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

XP_008454906.1 PREDICTED: uncharacterized protein LOC103495211 [Cucumis melo]

5.7e-89

89.13

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Query:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV
        +L  S  SP+C H+VSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRV+WDSLK+ VK+LWD+SPEPVK FPWNEALDNFIQLIADLILTVIKYL VPLL+
Subjt:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV

Query:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        VTS+SEMSYCAHEKKLL+VPFPFIIGFSVAE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPY+PYWGRIFIPHLANG
Subjt:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

XP_022136318.1 uncharacterized protein LOC111008035 [Momordica charantia]

1.3e-88

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Query:  KIEATDPSYPSDETHEVLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIA
        K+    P  P+   H        SP+C HVVS KPHKRFQNARS+VSCAMNMTAGQSDD G+VSWDSLKD VKKLWDSSPEPVKCFPWNEALDNFIQLIA
Subjt:  KIEATDPSYPSDETHEVLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIA

Query:  DLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        DL+L VIKYLCVPLL VTS+SEMSYCAHEKKL +VPFP I+GFSVAE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPH ANG
Subjt:  DLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

XP_022988926.1 uncharacterized protein LOC111486136 [Cucurbita maxima]

2.0e-86

88.7

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Query:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM
        SP+C HVVSLKPHKR QNARS+VSCAMNM+AGQSDD GR SWDSLK+ VKKLWD+SPEPVKCFPWNEAL+NFIQLIADLIL+VIKYL VPLLVVTS+SEM
Subjt:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM

Query:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        SYCAHEKKLL+VPFP IIGFSVAE MRQTALSLSPILKDLEVPWHLITIA+FFTLIKLPGPYYPYWGRIF+PH ANG
Subjt:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

XP_038889064.1 uncharacterized protein LOC120078811 [Benincasa hispida]

4.7e-91

89.13

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Query:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV
        +L  SR  P+C H++SL+PHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLK+ VK+LWD+SPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV
Subjt:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV

Query:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        VTS+SEMSYCAHEKKLL+VPFPFIIGFS+AE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPH  NG
Subjt:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6P0 Uncharacterized protein

2.2e-86

88.04

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Query:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV
        +L  SR SP+C HVVSLKPHKRFQNA SVVSCA NMTAGQSDDSGRV+WDSLK+ VK+LW+SSPEPVK FPWNEALDNFIQLIADLILTVIKYL VPLL+
Subjt:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV

Query:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        VTS+SEMSYCAHEKKLL+VPF FIIGFS AE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGP YPYWGRIFIPHLANG
Subjt:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

A0A1S3C0E1 uncharacterized protein LOC103495211

2.8e-89

89.13

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Query:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV
        +L  S  SP+C H+VSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRV+WDSLK+ VK+LWD+SPEPVK FPWNEALDNFIQLIADLILTVIKYL VPLL+
Subjt:  VLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLV

Query:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        VTS+SEMSYCAHEKKLL+VPFPFIIGFSVAE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPY+PYWGRIFIPHLANG
Subjt:  VTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

A0A6J1C7B2 uncharacterized protein LOC111008035

6.2e-89

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Query:  KIEATDPSYPSDETHEVLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIA
        K+    P  P+   H        SP+C HVVS KPHKRFQNARS+VSCAMNMTAGQSDD G+VSWDSLKD VKKLWDSSPEPVKCFPWNEALDNFIQLIA
Subjt:  KIEATDPSYPSDETHEVLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIA

Query:  DLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        DL+L VIKYLCVPLL VTS+SEMSYCAHEKKL +VPFP I+GFSVAE MRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPH ANG
Subjt:  DLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

A0A6J1EIP9 uncharacterized protein LOC111434507

1.7e-86

87.57

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Query:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM
        SP+C HVVSLKPHKR QNARS+VSCAMNM+AGQSDD GR SWDSLKD VKKLWD+SPEPVKCFPWNEAL+NFIQLIADLIL+VIKYL +PLL VTS+SEM
Subjt:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM

Query:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        SYCAHEKKLL+VPFP IIGFSVAE MRQTALSLSPILKDLEVPWHLITIA+FFTL+KLPGPYYPYWGRIF+PH ANG
Subjt:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

A0A6J1JED8 uncharacterized protein LOC111486136

9.9e-87

88.7

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Query:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM
        SP+C HVVSLKPHKR QNARS+VSCAMNM+AGQSDD GR SWDSLK+ VKKLWD+SPEPVKCFPWNEAL+NFIQLIADLIL+VIKYL VPLLVVTS+SEM
Subjt:  SPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEM

Query:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        SYCAHEKKLL+VPFP IIGFSVAE MRQTALSLSPILKDLEVPWHLITIA+FFTLIKLPGPYYPYWGRIF+PH ANG
Subjt:  SYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49510.1 embryo defective 1273

1.0e-51

57.86

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Query:  RSVVSCAMNMTAGQS-DDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFII
        RS++  A++M +G S +   ++++D+L    K +WD+SP+PVK FPWN A  NFIQL+ DL ++V+K+L VP+L V+S+SEMSYCAHE+KL LVPFP +I
Subjt:  RSVVSCAMNMTAGQS-DDSGRVSWDSLKDMVKKLWDSSPEPVKCFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFII

Query:  GFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG
        G  VA  +++TAL +SP LK+ EVPWHLI + +FFTLIKLPGPYYPYWGR+ +PH ANG
Subjt:  GFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHLANG

Sequences

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CDS sequence

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ATGGAGGAGACGAGGAAGAATACACGTGTCAGCAGAAAAGAGAGGATGCCAAGGGAGAGAGAAAGTAACGGCAACCATAAGATCGAAGCAACGGATCCATCGTATCCATC
GGACGAAACGCATGAAGTGTTGGAAACATCACGTTGGTCACCAAAATGCGGCCACGTAGTGAGTTTAAAACCACATAAAAGATTTCAGAATGCTAGATCTGTGGTCTCTT
GTGCTATGAATATGACTGCAGGACAATCAGATGATTCAGGAAGGGTAAGTTGGGATAGTTTGAAGGACATGGTAAAAAAGCTTTGGGACAGCTCGCCAGAGCCCGTGAAG
TGCTTCCCTTGGAATGAGGCATTGGATAACTTCATCCAGCTTATTGCTGATCTCATCTTGACCGTTATCAAATACTTGTGTGTACCATTACTCGTCGTTACCTCCGTTAG
CGAGATGTCCTACTGTGCTCATGAAAAGAAGCTTCTTCTTGTCCCATTTCCGTTTATAATTGGCTTCTCTGTTGCTGAGGCCATGAGACAGACAGCTTTAAGTCTATCTC
CAATTCTTAAGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATATTCTTCACCCTCATTAAACTGCCTGGCCCGTACTATCCATATTGGGGTCGCATATTCATT
CCCCATTTGGCAAATGGAGATGACATTGCTGGCTTCATCAGAATGAAGTGA

mRNA sequence

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Protein sequence

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MEETRKNTRVSRKERMPRERESNGNHKIEATDPSYPSDETHEVLETSRWSPKCGHVVSLKPHKRFQNARSVVSCAMNMTAGQSDDSGRVSWDSLKDMVKKLWDSSPEPVK
CFPWNEALDNFIQLIADLILTVIKYLCVPLLVVTSVSEMSYCAHEKKLLLVPFPFIIGFSVAEAMRQTALSLSPILKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFI
PHLANGDDIAGFIRMK

HG10005861 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome