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HG10005886 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005886
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein
Genome locationChr07:7694959..7695204
RNA-Seq ExpressionHG10005886
SyntenyHG10005886
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8722927.1 multiple RNA-binding domain-containing protein 1-like isoform X2 [Hibiscus syriacus]7.2e-0734.57Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRI--WDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVNDSW
        +I FWHDVW+N++ L +  P+I+ LS +   TVA+   F   +  W++ LR++  + E+ +W +L  L+++ SL+D  D +
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRI--WDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVNDSW

OVA19679.1 Reverse transcriptase zinc-binding domain [Macleaya cordata]3.0e-0536.23Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL
        ++SFW D+W N   L    PK+Y+LS   NA+++D+   +N   +W+L  ++  K DE  EW  +  LL
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL

TYK06564.1 hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa]2.3e-0535.53Show/hide
Query:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVND
        I+FW DVWV E    T    ++R+S   N +VA +W+     W +  R+  K +EI E+  L HLL +  + D  D
Subjt:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVND

XP_026383460.1 uncharacterized protein LOC113278957 [Papaver somniferum]1.0e-0534.72Show/hide
Query:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLT
        ISFW D+WV +  L    P +Y + +  N T++ ++N    IW+LG+ +   ++ I E A+L HLL++  +T
Subjt:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLT

XP_026420399.1 uncharacterized protein LOC113316434 [Papaver somniferum]3.0e-0534.72Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSL
        AI+FW+D+W  E+ LAT++P +Y+LS + N T+AD+ + +   W    ++   N E+ E+A+L  ++    L
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSL

TrEMBL top hitse value%identityAlignment
A0A200QL27 Reverse transcriptase zinc-binding domain1.9e-0536.23Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL
        ++SFW D+W N   L    PK+Y+LS   NA++ D+   +N   +W+L  ++  K DE  EW ++  LL
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL

A0A200RAD0 Reverse transcriptase zinc-binding domain1.5e-0536.23Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL
        ++SFW D+W N   L    PK+Y+LS   NA+++D+   +N   +W+L  ++  K DE  EW  +  LL
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNR--IWDLGLRQHPKNDEIVEWASLSHLL

A0A5D3C5F2 Uncharacterized protein1.1e-0535.53Show/hide
Query:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVND
        I+FW DVWV E    T    ++R+S   N +VA +W+     W +  R+  K +EI E+  L HLL +  + D  D
Subjt:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVND

A0A6A3AXC0 SWR1 complex subunit 24.2e-0532.1Show/hide
Query:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVAD--IWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDV-NDSW
        + FWHDVW+    L    P+++ LS++    VA+  ++N    +WD+ +R++  + E+ +W  +  LL S+SL+ V  D W
Subjt:  ISFWHDVWVNENDLATMNPKIYRLSSHTNATVAD--IWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDV-NDSW

A0A6A3C3M3 Multiple RNA-binding domain-containing protein 1-like isoform X23.5e-0734.57Show/hide
Query:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRI--WDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVNDSW
        +I FWHDVW+N++ L +  P+I+ LS +   TVA+   F   +  W++ LR++  + E+ +W +L  L+++ SL+D  D +
Subjt:  AISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRI--WDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVNDSW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATCTCCTTTTGGCATGATGTATGGGTTAATGAGAATGACTTGGCTACCATGAACCCGAAGATCTATAGGCTTTCAAGTCATACTAATGCAACTGTGGCTGATAT
TTGGAATTTCAAAAACAGAATCTGGGATCTGGGTCTTAGACAACATCCTAAAAATGATGAGATAGTGGAATGGGCCTCTCTTTCCCATCTTTTACAATCTACTTCTTTAA
CTGATGTGAATGATTCATGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATCTCCTTTTGGCATGATGTATGGGTTAATGAGAATGACTTGGCTACCATGAACCCGAAGATCTATAGGCTTTCAAGTCATACTAATGCAACTGTGGCTGATAT
TTGGAATTTCAAAAACAGAATCTGGGATCTGGGTCTTAGACAACATCCTAAAAATGATGAGATAGTGGAATGGGCCTCTCTTTCCCATCTTTTACAATCTACTTCTTTAA
CTGATGTGAATGATTCATGGAATTGA
Protein sequenceShow/hide protein sequence
MAISFWHDVWVNENDLATMNPKIYRLSSHTNATVADIWNFKNRIWDLGLRQHPKNDEIVEWASLSHLLQSTSLTDVNDSWN