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HG10005901 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005901
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L18-like
Genome locationChr07:7956699..7956944
RNA-Seq ExpressionHG10005901
SyntenyHG10005901
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441144.1 PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]5.6e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDE+IEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

XP_022152485.1 uncharacterized protein LOC111020202 [Momordica charantia]7.4e-3697.53Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

XP_022990182.1 uncharacterized protein LOC111487153 [Cucurbita maxima]5.6e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

XP_022993255.1 uncharacterized protein LOC111489327 [Cucurbita maxima]5.6e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

XP_023521951.1 uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]5.6e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

TrEMBL top hitse value%identityAlignment
A0A1S3B2Q8 50S ribosomal protein L18-like2.7e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDE+IEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

A0A6J1DE20 uncharacterized protein LOC1110202023.6e-3697.53Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

A0A6J1FFK7 uncharacterized protein LOC1114452796.1e-3697.53Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERI+GKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

A0A6J1JHY7 uncharacterized protein LOC1114871532.7e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

A0A6J1JY30 uncharacterized protein LOC1114893272.7e-3698.77Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDERIEGKLGIVIDTIKENGIMFVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

SwissProt top hitse value%identityAlignment
B1XSR7 50S ribosomal protein L181.2e-0432.43Show/hide
Query:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF
        +KV++ A+T  KDLR ++ + +   A + IGKL+AER+ +A V  ++++ R   R  G++  + +  +E G+ F
Subjt:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF

Q3BWW7 50S ribosomal protein L187.0e-0533.78Show/hide
Query:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF
        SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G++  + D  +E G+ F
Subjt:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF

Q4URF5 50S ribosomal protein L181.2e-0433.78Show/hide
Query:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF
        SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G++  + D  +E G+ F
Subjt:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF

Q5P316 50S ribosomal protein L181.1e-0535.14Show/hide
Query:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF
        S+V++ A+T   D+R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ F
Subjt:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF

Q8PNR1 50S ribosomal protein L187.0e-0533.78Show/hide
Query:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF
        SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G++  + D  +E G+ F
Subjt:  SKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMF

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein3.8e-1446.05Show/hide
Query:  HRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI
        HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Subjt:  HRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI

AT1G08845.2 Ribosomal L18p/L5e family protein3.8e-1446.05Show/hide
Query:  HRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI
        HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Subjt:  HRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI

AT3G20230.1 Ribosomal L18p/L5e family protein1.8e-3281.48Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP
        MHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ERIEGKLGIVIDTIKE+GI+FVP
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP

AT3G22450.1 Ribosomal L18p/L5e family protein9.3e-1341.56Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI
        +HR TSKV++VA + +KD++  L S  +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+  + +NG+
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI

AT5G27820.1 Ribosomal L18p/L5e family protein1.0e-0632.47Show/hide
Query:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI
        +H  T+ V   A++  K LR ++    D  A   IGK++ ER    D+ A++ + +K++R  GK+  VID+++E G+
Subjt:  MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAAGATCTTAGAAACAGTCTACCATCACTTACAGATCACAATGCATGTAGAGTAATAGGGAA
GCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCATATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAACTTGGTATTGTTATTGATACCATTAAGG
AGAATGGGATCATGTTTGTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAAGATCTTAGAAACAGTCTACCATCACTTACAGATCACAATGCATGTAGAGTAATAGGGAA
GCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCATATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAACTTGGTATTGTTATTGATACCATTAAGG
AGAATGGGATCATGTTTGTACCTTGA
Protein sequenceShow/hide protein sequence
MHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVIDTIKENGIMFVP