; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10005918 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005918
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Genome locationChr07:8371169..8372706
RNA-Seq ExpressionHG10005918
SyntenyHG10005918
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013591 - Brevis radix (BRX) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441692.1 PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X1 [Cucumis melo]3.5e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

XP_016899470.1 PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X4 [Cucumis melo]3.5e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

XP_038890268.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X1 [Benincasa hispida]8.8e-5792.74Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPEGHTAILNSGTV GQNGSNFNQLSTESLSMSINSRLESNGISK Q +STG KVQNEK EWVVQDEPGVY+TL ALPGGCNELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVK+TD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

XP_038890270.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X3 [Benincasa hispida]8.8e-5792.74Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPEGHTAILNSGTV GQNGSNFNQLSTESLSMSINSRLESNGISK Q +STG KVQNEK EWVVQDEPGVY+TL ALPGGCNELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVK+TD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

XP_038890271.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X4 [Benincasa hispida]8.8e-5792.74Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPEGHTAILNSGTV GQNGSNFNQLSTESLSMSINSRLESNGISK Q +STG KVQNEK EWVVQDEPGVY+TL ALPGGCNELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVK+TD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

TrEMBL top hitse value%identityAlignment
A0A0A0LN51 BRX domain-containing protein1.4e-5287.1Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPEG TAI+NS TV+GQNGSN NQLSTESLSMSINSRLESNGISK Q +STGIK  NEK EWVVQDEPGVY+TL  LPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWA+FGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

A0A1S3B416 X-linked retinitis pigmentosa GTPase regulator-like isoform X31.7e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

A0A1S3B4R6 X-linked retinitis pigmentosa GTPase regulator-like isoform X11.7e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

A0A1S4DUS6 X-linked retinitis pigmentosa GTPase regulator-like isoform X41.7e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

A0A5A7SQM0 X-linked retinitis pigmentosa GTPase regulator-like isoform X31.7e-5389.52Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE
        MAEKMPE  TAI+NS TVSGQNGSN NQLSTESLSMSINSRLESNGISKSQ +STGIK  NEK EWVVQDEPGVY+TL ALPGG NELKRVRFSRRHFTE
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQ-ISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTE

Query:  AQAEKWWAEFGAKVCERHKVKSTD
        AQAEKWWAEFGAKVCERHKVKSTD
Subjt:  AQAEKWWAEFGAKVCERHKVKSTD

SwissProt top hitse value%identityAlignment
Q6YUB8 Protein Brevis radix-like 16.2e-1337.72Show/hide
Query:  GHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESN--GISKS-QISTGI-KVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAE
        GH    + G  S    S+ +   TE+ SM  + R  S+   + +S ++S  +    +++ EWV +DEPGVY+T+ ALPGG  EL+RVRFSR  F+E  A 
Subjt:  GHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESN--GISKS-QISTGI-KVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAE

Query:  KWWAEFGAKVCERH
         WW E  A++ +++
Subjt:  KWWAEFGAKVCERH

Q84T65 Protein Brevis radix-like 42.0e-1150.82Show/hide
Query:  SKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAE
        S+ ++S     + E TEWV+QDEPGVY+T+  L  G  EL+RVRFSR  F E  A+ WW E
Subjt:  SKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAE

Q8GYL9 Protein Brevis radix-like 21.2e-1142.39Show/hide
Query:  LSTESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK
        LS E    S++ R ES        +  ++ ++E  EWV Q EPGV +T  +LP G N++KR+RFSR  F + QA+KWWAE   KV E + V+
Subjt:  LSTESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK

Q8GZ92 Protein Brevis radix-like 42.4e-1251.61Show/hide
Query:  QNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK
        + E  EWV Q EPGV +T  +LPGG N+LKR+RFSR  F + QA++WWA+   KV E + V+
Subjt:  QNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK

Q947D2 PH, RCC1 and FYVE domains-containing protein 12.8e-1343.96Show/hide
Query:  INSRLE----SNGISKSQISTGIKVQNE-KTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD
        I+ R+E     N        TG+   N+ + EW+ Q EPGVY+TL AL  G  +L+RVRFSRR F E QAE WW+E   KV E++ V+ ++
Subjt:  INSRLE----SNGISKSQISTGIKVQNE-KTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD

Arabidopsis top hitse value%identityAlignment
AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain9.5e-2549.59Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLS--TESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFT
        MAEK  +  +   NS     +      Q S  T   SM        N ++    + G + QN+K E VVQDEPGVYLTL +LPGG  ELKRVRFSR+ FT
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLS--TESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFT

Query:  EAQAEKWWAEFGAKVCERHKV
        E QAEKWW E GAKVCERH +
Subjt:  EAQAEKWWAEFGAKVCERHKV

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain3.5e-1940.44Show/hide
Query:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSR-LESNGISKSQISTGI------------KVQNEKTEWVVQDEPGVYLTLCALPGGCNEL
        MAE++P G    + S       GS+  ++   ++    NS+  E NGI+    S G             + +NEK EWV QDEPGVY+TL AL GG  +L
Subjt:  MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSR-LESNGISKSQISTGI------------KVQNEKTEWVVQDEPGVYLTLCALPGGCNEL

Query:  KRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD
        KRVRFSR+ F+E QAE+WWA+   +V E++ V+  D
Subjt:  KRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.2e-1654.79Show/hide
Query:  SQISTGIKVQ--NEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK
        ++IST  K      + EWV QDEPGVY+TL AL GG  +LKRVRFSR+ F+E QAE+WWAE   +V E++ V+
Subjt:  SQISTGIKVQ--NEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.2e-1654.79Show/hide
Query:  SQISTGIKVQ--NEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK
        ++IST  K      + EWV QDEPGVY+TL AL GG  +LKRVRFSR+ F+E QAE+WWAE   +V E++ V+
Subjt:  SQISTGIKVQ--NEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK

AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.8e-1541Show/hide
Query:  SNFNQLSTESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD
        ++  +L +E + +S N   E    S+S  ++       + EW+ Q EPGVY+TL AL  G  +LKRVRFSRR F E QAE WW+E   +V E++ ++ TD
Subjt:  SNFNQLSTESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVKSTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGAAGATGCCAGAGGGACACACTGCTATTCTCAACTCTGGCACTGTTTCTGGGCAAAATGGTAGTAATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATGAG
CATAAACTCTCGTTTGGAGTCTAATGGCATTTCAAAAAGTCAAATATCAACTGGAATCAAAGTACAAAATGAGAAGACAGAATGGGTTGTACAAGACGAACCAGGCGTGT
ACTTAACTCTGTGTGCTTTGCCAGGAGGATGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTTACAGAAGCTCAAGCAGAGAAATGGTGGGCGGAATTCGGA
GCCAAGGTTTGCGAGCGGCATAAAGTAAAGAGTACAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGAAGATGCCAGAGGGACACACTGCTATTCTCAACTCTGGCACTGTTTCTGGGCAAAATGGTAGTAATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATGAG
CATAAACTCTCGTTTGGAGTCTAATGGCATTTCAAAAAGTCAAATATCAACTGGAATCAAAGTACAAAATGAGAAGACAGAATGGGTTGTACAAGACGAACCAGGCGTGT
ACTTAACTCTGTGTGCTTTGCCAGGAGGATGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTTACAGAAGCTCAAGCAGAGAAATGGTGGGCGGAATTCGGA
GCCAAGGTTTGCGAGCGGCATAAAGTAAAGAGTACAGATTAA
Protein sequenceShow/hide protein sequence
MAEKMPEGHTAILNSGTVSGQNGSNFNQLSTESLSMSINSRLESNGISKSQISTGIKVQNEKTEWVVQDEPGVYLTLCALPGGCNELKRVRFSRRHFTEAQAEKWWAEFG
AKVCERHKVKSTD