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HG10005957 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005957
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr07:9770713..9772592
RNA-Seq ExpressionHG10005957
SyntenyHG10005957
Gene Ontology termsGO:0006376 - mRNA splice site selection (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029944.1 putative RNA-binding protein Luc7-like 1 [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2081.71Show/hide
Query:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
        RSVVENLIENLVET+T+VIVVTVEGIM VGAGIVIGIMIGIVM  +A ETQIAL ILE+V VHAH QQT+NVQGTM  TS V
Subjt:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
TYK22190.1 putative RNA-binding protein Luc7-like 2 isoform X1 [Cucumis melo var. makuwa]9.7e-2592.68Show/hide
Query:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
        RSVVE+LIENLVETVT+VIVVTVEGIM VGAGIVIGI IGIVMIESATETQIAL ILEVVAVHAHDQQTVNVQGTM ATSTV
Subjt:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
TrEMBL top hitse value%identityAlignment
A0A5D3DFM5 Putative RNA-binding protein Luc7-like 2 isoform X14.7e-2592.68Show/hide
Query:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
        RSVVE+LIENLVETVT+VIVVTVEGIM VGAGIVIGI IGIVMIESATETQIAL ILEVVAVHAHDQQTVNVQGTM ATSTV
Subjt:  RSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATAAAATTAGAGATGACAGGAAAGCAGATCAATTTATGTTGAGAATGGTATATCTAAGGAGCGTAGTAGAGAACCTGATCGAGAACCTAGTAGAGACCGTGAC
CATGGTGATAGTCGTGACCGTGGAAGGGATAATGATCGTAGGAGCAGGGATCGTGATAGGTATCATGATCGGGATCGTTATGATCGAGAGCGCAACAGAGACCCAGATCG
CTCTTACGATTCTAGAAGTCGTCGCCGTTCACGCTCACGATCAACAGACCGTGAACGTGCAAGGGACTATGACCGCCACAAGTACTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATAAAATTAGAGATGACAGGAAAGCAGATCAATTTATGTTGAGAATGGTATATCTAAGGAGCGTAGTAGAGAACCTGATCGAGAACCTAGTAGAGACCGTGAC
CATGGTGATAGTCGTGACCGTGGAAGGGATAATGATCGTAGGAGCAGGGATCGTGATAGGTATCATGATCGGGATCGTTATGATCGAGAGCGCAACAGAGACCCAGATCG
CTCTTACGATTCTAGAAGTCGTCGCCGTTCACGCTCACGATCAACAGACCGTGAACGTGCAAGGGACTATGACCGCCACAAGTACTGTTTAA
Protein sequenceShow/hide protein sequence
MWDKIRDDRKADQFMLRMVYLRSVVENLIENLVETVTMVIVVTVEGIMIVGAGIVIGIMIGIVMIESATETQIALTILEVVAVHAHDQQTVNVQGTMTATSTV