CuGenDBv2

Gene ID	HG10005958
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	luc7-like protein
Genome location	Chr07:9776304..9784569
RNA-Seq Expression	HG10005958
Synteny	HG10005958
Gene Ontology terms	GO:0006376 - mRNA splice site selection (biological process) GO:0005685 - U1 snRNP (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR004882 - Luc7-related

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008441724.1 PREDICTED: putative RNA-binding protein Luc7-like 2 isoform X1 [Cucumis melo]

2.1e-75

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

XP_008441726.1 PREDICTED: putative RNA-binding protein Luc7-like 2 isoform X2 [Cucumis melo]

1.1e-76

68.22

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI
         KL+  ++CG   S +   D + ++ F   L+ G +++ +  ++++  L++ + T  I
Subjt:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI

XP_031736790.1 putative RNA-binding protein Luc7-like 2 isoform X3 [Cucumis sativus]

1.1e-76

68.22

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI
         KL+  ++CG   S +   D + ++ F   L+ G +++ +  ++++  L++ + T  I
Subjt:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI

XP_031736791.1 putative RNA-binding protein Luc7-like 1 isoform X4 [Cucumis sativus]

2.1e-75

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

XP_031736792.1 putative RNA-binding protein Luc7-like 1 isoform X5 [Cucumis sativus]

2.1e-75

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKT3 Uncharacterized protein

5.3e-77

68.22

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI
         KL+  ++CG   S +   D + ++ F   L+ G +++ +  ++++  L++ + T  I
Subjt:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI

A0A1S3B3L5 putative RNA-binding protein Luc7-like 2 isoform X1

1.0e-75

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

A0A1S3B430 putative RNA-binding protein Luc7-like 2 isoform X2

5.3e-77

68.22

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI
         KL+  ++CG   S +   D + ++ F   L+ G +++ +  ++++  L++ + T  I
Subjt:  FKLKK-NLCGFMPSTIKIEDEKWSNIF---LNFGDIELIDPPSKVRGALFIKDFTNHI

A0A5D3DFM5 Putative RNA-binding protein Luc7-like 2 isoform X1

1.0e-75

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEEGK KGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

A0A6J1KI81 putative RNA-binding protein Luc7-like 2

8.4e-75

78.57

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +YEE KTKG+HNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSK+IKEKLKEADQY                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPV+DSSKYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G03340.1 LUC7 related protein

7.6e-60

63.33

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQYD---------------------
        +Y E + KG+ NYDR+LED IDRLI+ECDRKI RALKRL+EEDAKAAIAISVSEVTQ PE+LELS++IKEK+KEAD +D                     
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQYD---------------------

Query:  -----------AFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                   AFNKDRASLPQP+P  PP + LP   PDPRTQEMINEKLKKAE+LGEQGM+DEAQKALEEAEALKKL  R+EP  DS+KYTA DVRI  
Subjt:  -----------AFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

AT5G17440.1 LUC7 related protein

2.9e-59

63.81

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Query:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------
        +Y++ K KG+ NYDR+LED IDRLI+ECDRKI RAL RL+EEDAKAAIAISV+E TQ PE+LELSK+IKEK+KEAD +                      
Subjt:  KYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLKEADQY----------------------

Query:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK
                  DAFNKDR SL Q +P   P A LP   PDPRTQEMINEKLKKAEELGEQGM+DEAQKALEEAEALKKL ARQEPVVDS+KYTAADVRI  
Subjt:  ----------DAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILK

Query:  FKLKK-NLCG
         KL+  ++CG
Subjt:  FKLKK-NLCG

Sequences

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CDS sequence

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ATGATTGAGAGAACAAGCAGTCAAAAACCAATTGTTGTAAATCTTCACTATTCATCATACATAATGGACCAACAGAGGGAGAAAGGTAGTGCCCCTGTAGCTTATGTTGC
AAAATATGAAGAAGGAAAGACTAAAGGGATTCATAACTATGACCGAGACTTGGAGGATGTTATAGATCGTCTCATTATCGAGTGTGACAGAAAAATTGCTAGAGCCTTGA
AACGACTTGAGGAGGAAGATGCAAAGGCAGCTATTGCAATTTCTGTCTCCGAAGTCACCCAGATACCTGAGGTACTTGAGTTATCAAAAGAAATTAAAGAGAAGTTGAAA
GAAGCCGACCAATATGATGCTTTCAACAAAGATAGGGCATCTTTGCCTCAACCTCTGCCAAACCCACCACCTCTGGCTCCTCTACCTGTTGTAGCTCCTGATCCTCGTAC
ACAAGAGATGATAAATGAGAAGTTGAAAAAGGCCGAGGAACTTGGTGAGCAAGGAATGATTGACGAGGCTCAAAAAGCACTGGAGGAAGCTGAAGCACTTAAGAAGTTGC
CTGCTAGGCAGGAGCCAGTGGTGGATTCATCCAAATATACAGCTGCTGATGTGCGAATTCTAAAATTCAAGTTAAAAAAGAACTTGTGTGGTTTTATGCCTTCGACCATT
AAGATTGAAGACGAAAAGTGGAGCAACATCTTCTTGAATTTCGGGGACATTGAGCTAATTGATCCTCCTAGCAAGGTTAGAGGTGCTTTATTTATCAAAGATTTTACTAA
CCATATTGATGTTTGCTTGAATCAAGTTATGTTGGACGAAGGGTTGGAGTTTGAACCACTAAATCCTGTTTTGGATTTCCTCTTACTGTCTCGGAATATTTCGAGTTTTT
CAAGAAACCCATTCGTTCAACAAAAGGATTGTCAGAAGCTACATTCGACTCCCGTTACTTCTTTGAAAGATAATAAAGCTCATTTTTCAAGTGGAAAAGCTAGCGGATCC
TTAACTCGCTCCCTAGTTTCTAAGAAATTCAAGAGACAGTTTGAAGCCTTTTCCAAAGCCTATTTCCAGAAAAAAGAGATCCTTTCTCAAGCCTTAGCAACAAATGGCAA
ACCAATATCTTGTAAGAGTTTTGACATTCATTTCAAGGAATATGGAGTTAACTTGGAGTTAACTTGGATGTTTTAG

mRNA sequence

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Protein sequence

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MIERTSSQKPIVVNLHYSSYIMDQQREKGSAPVAYVAKYEEGKTKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSEVTQIPEVLELSKEIKEKLK
EADQYDAFNKDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEALKKLPARQEPVVDSSKYTAADVRILKFKLKKNLCGFMPSTI
KIEDEKWSNIFLNFGDIELIDPPSKVRGALFIKDFTNHIDVCLNQVMLDEGLEFEPLNPVLDFLLLSRNISSFSRNPFVQQKDCQKLHSTPVTSLKDNKAHFSSGKASGS
LTRSLVSKKFKRQFEAFSKAYFQKKEILSQALATNGKPISCKSFDIHFKEYGVNLELTWMF

HG10005958 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome