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HG10005959 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005959
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLUC7 related protein
Genome locationChr07:9785375..9785907
RNA-Seq ExpressionHG10005959
SyntenyHG10005959
Gene Ontology termsGO:0006376 - mRNA splice site selection (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR004882 - Luc7-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036822.1 putative RNA-binding protein Luc7-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

XP_022998948.1 putative RNA-binding protein Luc7-like 2 [Cucurbita maxima]2.5e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

XP_031736790.1 putative RNA-binding protein Luc7-like 2 isoform X3 [Cucumis sativus]2.5e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

XP_038889987.1 putative RNA-binding protein Luc7-like 2 isoform X2 [Benincasa hispida]2.5e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

XP_038889990.1 putative RNA-binding protein Luc7-like 2 isoform X3 [Benincasa hispida]2.5e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

TrEMBL top hitse value%identityAlignment
A0A0A0LKT3 Uncharacterized protein1.2e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

A0A5A7SSI6 Putative RNA-binding protein Luc7-like 2 isoform X11.2e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

A0A5D3DFM5 Putative RNA-binding protein Luc7-like 2 isoform X11.2e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

A0A6J1CRX6 putative RNA-binding protein Luc7-like 2 isoform X11.2e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

A0A6J1KI81 putative RNA-binding protein Luc7-like 21.2e-32100Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

SwissProt top hitse value%identityAlignment
Q54XQ8 Luc7-like protein2.5e-1145.83Show/hide
Query:  MDAFRRQLDQLMGANRN---GDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKM-DMGPCPKIHSLQLRKEY
        MDA R QLD+ +G +RN    D  +V   + D D+C+ FL GLCPHELF    + D+GPC K+H     K+Y
Subjt:  MDAFRRQLDQLMGANRN---GDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKM-DMGPCPKIHSLQLRKEY

Q7TNC4 Putative RNA-binding protein Luc7-like 24.2e-1145.31Show/hide
Query:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        R  LDQLMG +R+GD      K+ D  VC+  L+  CPH++   T+MD+G C K+H L LR +Y
Subjt:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

Q9NQ29 Putative RNA-binding protein Luc7-like 11.6e-1046.88Show/hide
Query:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        R  LDQLMG  R+GD      K+ D  VC+  L+  CPH++   T+MD+G C KIH L LR +Y
Subjt:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

Q9USM4 U1 snRNP-associated protein usp1061.6e-1350Show/hide
Query:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        R+ ++QLMG+N +         + DR VCR FL G+CPH++F  TKMD+GPCPKIHS +L+ +Y
Subjt:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

Q9Y383 Putative RNA-binding protein Luc7-like 24.2e-1145.31Show/hide
Query:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        R  LDQLMG +R+GD      K+ D  VC+  L+  CPH++   T+MD+G C K+H L LR +Y
Subjt:  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

Arabidopsis top hitse value%identityAlignment
AT3G03340.1 LUC7 related protein2.6e-3286.76Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDA R+QLD LMGANRNGDVQEV+RKYYDRDVCR++L GLCPH+LFQLTKMDMGPCPK+HSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

AT5G17440.1 LUC7 related protein5.8e-3286.76Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDA R+QLD LMGANRNGDV EV+RKYYDRDVCR++L GLCPHELFQLTKMDMGPCPK+HSLQLRKEY
Subjt:  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

AT5G51410.1 LUC7 N_terminus domain-containing protein2.6e-1144.44Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C +IH  +L++ +
Subjt:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

AT5G51410.2 LUC7 N_terminus domain-containing protein2.6e-1144.44Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C +IH  +L++ +
Subjt:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY

AT5G51410.3 LUC7 N_terminus domain-containing protein2.6e-1144.44Show/hide
Query:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY
        MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C +IH  +L++ +
Subjt:  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTTTTAGAAGGCAACTGGACCAGCTAATGGGTGCGAATCGAAATGGCGACGTGCAGGAGGTTAGCCGCAAGTACTACGACCGCGATGTGTGCCGCATGTTCTT
AGTTGGGCTTTGTCCCCATGAGCTCTTCCAACTCACGAAAATGGATATGGGTCCTTGTCCGAAGATCCACTCCTTGCAACTTAGGAAAGAGTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTTTTAGAAGGCAACTGGACCAGCTAATGGGTGCGAATCGAAATGGCGACGTGCAGGAGGTTAGCCGCAAGTACTACGACCGCGATGTGTGCCGCATGTTCTT
AGTTGGGCTTTGTCCCCATGAGCTCTTCCAACTCACGAAAATGGATATGGGTCCTTGTCCGAAGATCCACTCCTTGCAACTTAGGAAAGAGTATCCTTGA
Protein sequenceShow/hide protein sequence
MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEYP