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HG10005978 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10005978
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLate embryogenesis abundant protein (LEA) family protein
Genome locationChr07:10548939..10570022
RNA-Seq ExpressionHG10005978
SyntenyHG10005978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598970.1 hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia]8.6e-1243.84Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M S TLFKS      FGA AI RRS  S+ +L+ ASNPK I                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AK+AMEA    AKD+  RAKDT+V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

XP_022933143.1 uncharacterized protein At4g13230 [Cucurbita moschata]2.1e-1345.21Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPKFI                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AK+AMEA    AKD+  RAKDT+V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

XP_022973925.1 uncharacterized protein At4g13230 [Cucurbita maxima]8.6e-1244.52Show/hide
Query:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M SSTLFKS      FGAA I  RS  S+ +L  ASNPKFI                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AKQAMEA    AKD+  RAKD++V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

XP_023546410.1 uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]1.7e-1244.52Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPK I                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AK+AMEA    AKD+  RAKDT+V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

XP_038889268.1 uncharacterized protein At4g13230-like [Benincasa hispida]2.3e-2556.55Show/hide
Query:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEVS
        MASSTLFK+      FGAAITRRST S+ TLILASNPKFI                                       HVSEKT ++AGMVSAKAH VS
Subjt:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEVS

Query:  AMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        A AKQAMEAAWD+AKDT QRAKDTLVDTANDSK+FVKAN   + +
Subjt:  AMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

TrEMBL top hitse value%identityAlignment
A0A067EI82 Uncharacterized protein8.1e-0846Show/hide
Query:  MASSTLFKSFGAAITRRSTISHPTLILASNPKFIHVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        MASSTL K    AI RRS I +    LAS P++I +S+ T + AG VS  A ++   AKQ ++ AW +AKDT Q  KD L+  A+ SKE VK NA  +++
Subjt:  MASSTLFKSFGAAITRRSTISHPTLILASNPKFIHVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

A0A2N9J0W5 Uncharacterized protein3.7e-0840.17Show/hide
Query:  FKSFGAAITRRSTISHPTLILASNPKFIH----------------------------VSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKD
        F   GAAI RR+T  +P L +ASNP+ I                             V++KT ++AGM+SA A +V+  AKQ  + AW TAKDT Q+AKD
Subjt:  FKSFGAAITRRSTISHPTLILASNPKFIH----------------------------VSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKD

Query:  TLVDTANDSKEFVKANA
        T++  A +SKE +K NA
Subjt:  TLVDTANDSKEFVKANA

A0A6J1CSM2 uncharacterized protein At4g13230-like1.9e-0938.93Show/hide
Query:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFI-------------------------------------------HVSEKTMNVAGMVSAKA
        MAS TL K+       GAAI RRST S+P L+L SNPKF+                                           HV EK  ++ GMV +  
Subjt:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFI-------------------------------------------HVSEKTMNVAGMVSAKA

Query:  HEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
         E+S  AKQ MEAAWD+A    QRAKDT+V+   +SKEFVKANA  + +
Subjt:  HEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

A0A6J1F3W7 uncharacterized protein At4g132309.9e-1445.21Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPKFI                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AK+AMEA    AKD+  RAKDT+V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

A0A6J1ICL4 uncharacterized protein At4g132304.2e-1244.52Show/hide
Query:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV
        M SSTLFKS      FGAA I  RS  S+ +L  ASNPKFI                                       HVSEKT ++AGM+SA+A EV
Subjt:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFI---------------------------------------HVSEKTMNVAGMVSAKAHEV

Query:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        SA AKQAMEA    AKD+  RAKD++V+T  DSK+FVKANA  + +
Subjt:  SAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13230.1 Late embryogenesis abundant protein (LEA) family protein7.0e-0436.92Show/hide
Query:  VSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR
        V++K    A  +S  A  +   AK   E AWD  KDTT++ KDT+     ++KE +KA A  + R
Subjt:  VSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAACAATCTCCCACCCTACTCTCATTTTGGCTTCTAACCCTAAATTTATTCATGTCAG
TGAAAAGACAATGAATGTGGCAGGAATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAATGGCAAAGCAAGCAATGGAAGCAGCATGGGACACAGCAAAGGACACAACCC
AAAGGGCAAAAGACACGTTGGTTGACACTGCCAATGACTCCAAGGAATTTGTCAAAGCAAATGCTAACCCTCTTTCCCGTCGTTGCCCTCAGCCCACTCGCCTCCACTTC
GCCACCGGTCACCTAATTCTCAGGCTGCCCCTTGTCGTCATCCACGATCAGTGCCGCTACTGCCAACGTACTGTCGTACGTCCGTTGCCCAGTTTGACAGCCACCGTTCG
CATAGGTCACGTCGTTGTCGCCAAAGTTTGCGTCCCAGATCCTGTTGTGCGCGTCTGCCGTGGGTTTTGTCTGCGCTGTTCGTGGGTTCGAAACACACTGCCACTTCTGC
AGGTCCTCCCGTCAATCTTCCAGCGCTGGTCTGCACGCCTGCGATCGTCGCCGCTCTTTGGGTTCGCCGGAGTTCTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAACAATCTCCCACCCTACTCTCATTTTGGCTTCTAACCCTAAATTTATTCATGTCAG
TGAAAAGACAATGAATGTGGCAGGAATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAATGGCAAAGCAAGCAATGGAAGCAGCATGGGACACAGCAAAGGACACAACCC
AAAGGGCAAAAGACACGTTGGTTGACACTGCCAATGACTCCAAGGAATTTGTCAAAGCAAATGCTAACCCTCTTTCCCGTCGTTGCCCTCAGCCCACTCGCCTCCACTTC
GCCACCGGTCACCTAATTCTCAGGCTGCCCCTTGTCGTCATCCACGATCAGTGCCGCTACTGCCAACGTACTGTCGTACGTCCGTTGCCCAGTTTGACAGCCACCGTTCG
CATAGGTCACGTCGTTGTCGCCAAAGTTTGCGTCCCAGATCCTGTTGTGCGCGTCTGCCGTGGGTTTTGTCTGCGCTGTTCGTGGGTTCGAAACACACTGCCACTTCTGC
AGGTCCTCCCGTCAATCTTCCAGCGCTGGTCTGCACGCCTGCGATCGTCGCCGCTCTTTGGGTTCGCCGGAGTTCTTGTTTGA
Protein sequenceShow/hide protein sequence
MASSTLFKSFGAAITRRSTISHPTLILASNPKFIHVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTLVDTANDSKEFVKANANPLSRRCPQPTRLHF
ATGHLILRLPLVVIHDQCRYCQRTVVRPLPSLTATVRIGHVVVAKVCVPDPVVRVCRGFCLRCSWVRNTLPLLQVLPSIFQRWSARLRSSPLFGFAGVLV