CuGenDBv2

Gene ID	HG10005990
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase family protein
Genome location	Chr07:10704761..10707823
RNA-Seq Expression	HG10005990
Synteny	HG10005990
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR001514 - DNA-directed RNA polymerase, 30-40kDa subunit, conserved site IPR011262 - DNA-directed RNA polymerase, insert domain IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138895.1 DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]

5.1e-165

95.31

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEKRTWVESCPTR  ELD VTHQVMVVDPEAYTYDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

XP_008441761.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo]

8.7e-165

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEK TWVESCPTR  ELDPVTHQVMVV+PEAYTYDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

XP_022147788.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia]

3.1e-162

93.44

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDL SSDHTVVPVDF+DSAAAS E  DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEE++TWVESCPTR  E+DP THQV+VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

XP_022927752.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata]

2.0e-161

93.12

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

XP_038891253.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]

3.1e-162

93.75

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCH+DQTLDVTSKDLYSSDHTVVPVDFSDSAAA+ EA D+KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LM+TLT EEKRTWVESCPTR  E D VTHQV VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHS1 RPOLD domain-containing protein

2.5e-165

95.31

Show/hide

Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEKRTWVESCPTR  ELD VTHQVMVVDPEAYTYDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

A0A1S3B3P9 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like

4.2e-165

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEK TWVESCPTR  ELDPVTHQVMVV+PEAYTYDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

A0A6J1D221 DNA-directed RNA polymerases II, IV and V subunit 3-like

1.5e-162

93.44

Show/hide

Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDL SSDHTVVPVDF+DSAAAS E  DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEE++TWVESCPTR  E+DP THQV+VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

A0A6J1ELW4 DNA-directed RNA polymerases II, IV and V subunit 3-like

9.7e-162

93.12

Show/hide

Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

A0A6J1JIE7 DNA-directed RNA polymerases II, IV and V subunit 3-like

9.7e-162

93.12

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM +P+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        LMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYTYDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

SwissProt top hits

e value

%identity

Alignment

P97760 DNA-directed RNA polymerase II subunit RPB3

6.0e-44

51.58

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Query:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV
        Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSV
Subjt:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV

Query:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPN
        EF L  +C+ DQT  VTS+DL S+   V+PV   +      +  +   I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F   P+
Subjt:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPN

Q39211 DNA-directed RNA polymerases II, IV and V subunit 3

1.2e-140

79.69

Show/hide

Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEF L +KC +DQTLDVTS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFM +P+I INED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        +M+TL+ EEK   +ES PT+   +DPVT QV+VVDPEAYTYD+EVIKKAEAMG  GL++I+ K+DSFIFTVESTGA+KAS + LNAID+LKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

Q39212 DNA-directed RNA polymerases IV and V subunit 3B

8.0e-129

74.38

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+M +P+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        +M TLT EEK   +ES PT+   +DPVT QV+VVDPEAYTYD+EVIKKAEAMG  GL++I  K DSF+FTVESTGA+KAS + LNAIDILKQKLDA+RLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        D+TVEADDQFGELGAH+R G
Subjt:  DDTVEADDQFGELGAHIRGG

Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3

2.1e-44

52.11

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Query:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV
        Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSV
Subjt:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV

Query:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPN
        EF L  +C+ DQT  VTS+DL S+   V+PV   +      +  +   I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F   P+
Subjt:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPN

Q54DH7 DNA-directed RNA polymerase II subunit rpb3

5.6e-66

48.82

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Query:  SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCS
        S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFIAHRLGLIPL S+      ++RDC   D   +C+ CS
Subjt:  SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCS

Query:  VEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLME
        VE  L  KC  ++  DVTS DL S +  V+PV    +++ S +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+   T+  +P I +N++ ++
Subjt:  VEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLME

Query:  TLTLEEKRTWVESCPTRGLELDP--VTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK-ASIDLNAIDILKQKLDAVR
         LT ++K  WV SCPT+     P   T QV + DP    Y  E  KKAE+ G   LV +  K+D FIFTVES+GA+K   I L AI I+K+KL  ++
Subjt:  TLTLEEKRTWVESCPTRGLELDP--VTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK-ASIDLNAIDILKQKLDAVR

Arabidopsis top hits

e value

%identity

Alignment

AT1G60850.1 DNA-directed RNA polymerase family protein

6.9e-27

30.72

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Query:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC
        G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+ DE +AHR+GLIP+ ++  +    S      + D   E  
Subjt:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC

Query:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRGQELRLRAIARKGIGKDHAKW
        ++ F L  KC  ++  L V + DL            S + T  P     FS S  +  E  +         I+I KL  GQE+ L A A KGIGK HAKW
Subjt:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRGQELRLRAIARKGIGKDHAKW

Query:  SPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK
        SP  T  + + P + +  ++ + L        V  CP    +++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Subjt:  SPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK

Query:  ASI-DLNAIDILKQKLDAV
          +    A+ IL+ K +A+
Subjt:  ASI-DLNAIDILKQKLDAV

AT1G60850.2 DNA-directed RNA polymerase family protein

6.9e-27

30.72

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Query:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC
        G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+ DE +AHR+GLIP+ ++  +    S      + D   E  
Subjt:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC

Query:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRGQELRLRAIARKGIGKDHAKW
        ++ F L  KC  ++  L V + DL            S + T  P     FS S  +  E  +         I+I KL  GQE+ L A A KGIGK HAKW
Subjt:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRGQELRLRAIARKGIGKDHAKW

Query:  SPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK
        SP  T  + + P + +  ++ + L        V  CP    +++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Subjt:  SPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK

Query:  ASI-DLNAIDILKQKLDAV
          +    A+ IL+ K +A+
Subjt:  ASI-DLNAIDILKQKLDAV

AT2G15400.1 DNA-directed RNA polymerase family protein

5.7e-130

74.38

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+M +P+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        +M TLT EEK   +ES PT+   +DPVT QV+VVDPEAYTYD+EVIKKAEAMG  GL++I  K DSF+FTVESTGA+KAS + LNAIDILKQKLDA+RLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        D+TVEADDQFGELGAH+R G
Subjt:  DDTVEADDQFGELGAHIRGG

AT2G15400.2 DNA-directed RNA polymerase family protein

4.4e-90

72.29

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+M +P+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQV
        +M TLT EEK   +ES PT+   +DPVT QV
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQV

AT2G15430.1 DNA-directed RNA polymerase family protein

8.4e-142

79.69

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Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED
        FCSVEF L +KC +DQTLDVTS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFM +P+I INED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINED

Query:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS
        +M+TL+ EEK   +ES PT+   +DPVT QV+VVDPEAYTYD+EVIKKAEAMG  GL++I+ K+DSFIFTVESTGA+KAS + LNAID+LKQKLDAVRLS
Subjt:  LMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS

Query:  DDTVEADDQFGELGAHIRGG
        DDTVEADDQFGELGAH+RGG
Subjt:  DDTVEADDQFGELGAHIRGG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGGGAGTTCGTATCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCTAGCATGGCCAACGCCCT
CCGCCGCGTCATGATCGCCGAGGTGCCCACCATTGCCATTGACCTAGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTTGGTCTCA
TTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCC
AAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGTTGAAGC
GCGGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGCGGTTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTG
CAGCAACCGTGACATTCATGTTGAAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGA
GGTTTGGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTACAGCTGGACT
TGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTTACAGTTGAATCTACTGGTGCAATCAAAGCTTCCATTGATCTCAATGCCATAGATATCCTGAAACAGAAGCTGG
ATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATTCGAGGTGGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRA
KCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTR
GLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKASIDLNAIDILKQKLDAVRLSDDTVEADDQFGELGAHIRGG

HG10005990 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome