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HG10006008 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006008
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRBR-type E3 ubiquitin transferase
Genome locationChr07:11318029..11320987
RNA-Seq ExpressionHG10006008
SyntenyHG10006008
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR031127 - E3 ubiquitin ligase RBR family
IPR044066 - TRIAD supradomain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586185.1 putative E3 ubiquitin-protein ligase ARI8, partial [Cucurbita argyrosperma subsp. sororia]1.5e-39100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

KAG7021016.1 putative E3 ubiquitin-protein ligase ARI7, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-39100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

XP_022144490.1 probable E3 ubiquitin-protein ligase ARI8 [Momordica charantia]1.5e-39100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

XP_022965653.1 probable E3 ubiquitin-protein ligase ARI8 [Cucurbita maxima]1.5e-39100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

XP_023537577.1 probable E3 ubiquitin-protein ligase ARI8 [Cucurbita pepo subsp. pepo]1.5e-39100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

TrEMBL top hitse value%identityAlignment
A0A0A0LHB9 Uncharacterized protein1.3e-3998.67Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MH+TCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

A0A1S3B4Y9 RBR-type E3 ubiquitin transferase1.3e-3998.67Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MH+TCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

A0A6J1CRR9 RBR-type E3 ubiquitin transferase7.4e-40100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

A0A6J1FIK3 RBR-type E3 ubiquitin transferase7.4e-40100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

A0A6J1HPL6 RBR-type E3 ubiquitin transferase7.4e-40100Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

SwissProt top hitse value%identityAlignment
P0C8K8 Putative E3 ubiquitin-protein ligase ARI67.7e-3477.03Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ
        MH+TCTPPCKFEFCWLCL  W++HGE +GG+YACNRYE AK++G+YD+AE+RREMAKNSLE+YTHYY+RWA+NQ
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ

Q84RR0 Probable E3 ubiquitin-protein ligase ARI77.4e-3785.33Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MH+TCTPPCK+EFCWLCLG W DHGERTGGFYACNRYE AKQEG YD+ E+RREMAKNSLERYTHYYERWA+NQ+
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

Q8L829 Probable E3 ubiquitin-protein ligase ARI55.7e-3786.49Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ
        MH+TCTPPCKFEFCWLCL  W++HGERTGGFYACNRYE AKQEG+YD+AE+RREMAKNSLERYTHYYERWA+NQ
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ

Q8W468 Probable E3 ubiquitin-protein ligase ARI82.3e-3888Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLG W++HGE+TGGFYACNRYE AKQ+G+YD+ EKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

Q9P3U4 E3 ubiquitin-protein ligase dbl46.8e-1445.57Show/hide
Query:  HITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSGSSLE
        H+TC   CK+EFCW+CLGPW++HG     +Y CNRYE        D   K R     SLERY HYY R+A ++  + L+
Subjt:  HITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSGSSLE

Arabidopsis top hitse value%identityAlignment
AT1G05890.1 RING/U-box superfamily protein4.0e-3886.49Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ
        MH+TCTPPCKFEFCWLCL  W++HGERTGGFYACNRYE AKQEG+YD+AE+RREMAKNSLERYTHYYERWA+NQ
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ

AT1G05890.2 RING/U-box superfamily protein4.0e-3886.49Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ
        MH+TCTPPCKFEFCWLCL  W++HGERTGGFYACNRYE AKQEG+YD+AE+RREMAKNSLERYTHYYERWA+NQ
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQ

AT1G65430.1 IBR domain-containing protein1.6e-3988Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MHITCTPPCKFEFCWLCLG W++HGE+TGGFYACNRYE AKQ+G+YD+ EKRREMAKNSLERYTHYYERWATNQS
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

AT2G31510.1 IBR domain-containing protein5.3e-3885.33Show/hide
Query:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        MH+TCTPPCK+EFCWLCLG W DHGERTGGFYACNRYE AKQEG YD+ E+RREMAKNSLERYTHYYERWA+NQ+
Subjt:  MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS

AT2G31780.1 RING/U-box superfamily protein4.5e-1343.24Show/hide
Query:  HITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS
        H++C+ PC+  FCW CL P SDH        ACN ++   ++      E +R+ AK++++RYTH+YERWA NQS
Subjt:  HITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGAACAGGAGGATTCTATGCATGTAATCGCTA
TGAAACTGCAAAGCAAGAGGGAGTGTATGACGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACC
AATCGGGTTCTTCTCTCGAGAGTGGGAGGAAGAATTATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGAACAGGAGGATTCTATGCATGTAATCGCTA
TGAAACTGCAAAGCAAGAGGGAGTGTATGACGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACC
AATCGGGTTCTTCTCTCGAGAGTGGGAGGAAGAATTATCTGTAA
Protein sequenceShow/hide protein sequence
MHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSGSSLESGRKNYL