; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006009 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006009
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioneukaryotic translation initiation factor 4B3
Genome locationChr07:11322360..11322863
RNA-Seq ExpressionHG10006009
SyntenyHG10006009
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR010433 - Plant specific eukaryotic initiation factor 4B


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049734.1 eukaryotic translation initiation factor 4B3 [Cucumis melo var. makuwa]2.3e-3982.24Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNN
         K+SF N
Subjt:  GKKSFNN

XP_004144838.1 eukaryotic translation initiation factor 4B3 [Cucumis sativus]1.4e-3670.73Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+I  +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSN I F
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNNRIEQRGAGGSRRHCRR
         K+SF N   +     + R  R+
Subjt:  GKKSFNNRIEQRGAGGSRRHCRR

XP_008447975.1 PREDICTED: eukaryotic translation initiation factor 4B3 [Cucumis melo]1.7e-3982.24Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNN
         K+SF+N
Subjt:  GKKSFNN

XP_038887904.1 eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida]9.8e-4378.05Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGNTGG+IG +PKLNLQP TLPVSD KS EISGT ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNNRIEQRGAGGSRRHCRR
        GKKSF N   + G   + +  R+
Subjt:  GKKSFNNRIEQRGAGGSRRHCRR

XP_038887905.1 eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida]9.8e-4378.05Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGNTGG+IG +PKLNLQP TLPVSD KS EISGT ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNNRIEQRGAGGSRRHCRR
        GKKSF N   + G   + +  R+
Subjt:  GKKSFNNRIEQRGAGGSRRHCRR

TrEMBL top hitse value%identityAlignment
A0A0A0K4M1 Uncharacterized protein6.6e-3770.73Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+I  +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSN I F
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNNRIEQRGAGGSRRHCRR
         K+SF N   +     + R  R+
Subjt:  GKKSFNNRIEQRGAGGSRRHCRR

A0A1S3BJA3 eukaryotic translation initiation factor 4B38.4e-4082.24Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNN
         K+SF+N
Subjt:  GKKSFNN

A0A5A7U3A1 Eukaryotic translation initiation factor 4B31.1e-3982.24Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF
        ADSDNW RKK+EGN GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISF
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISF

Query:  GKKSFNN
         K+SF N
Subjt:  GKKSFNN

A0A6J1C673 eukaryotic translation initiation factor 4B3-like6.4e-3270.18Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT--VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAI
        AD +NW RKK+EGN GG + G+PKLNLQP TLPVSD KS EISGT   ARSKSSNPFG  RPRE+VLA+KGHDWKKLD+QLESKIK+    EK E SN+ 
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT--VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAI

Query:  SFGKKSFNNRIEQR
        SFGKKSF    E R
Subjt:  SFGKKSFNNRIEQR

A0A6J1EKJ0 eukaryotic translation initiation factor 4B3 isoform X16.4e-3268.8Show/hide
Query:  ADSDNWERKKKEGNTGGIIGG--QPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAI
        ADSD W RKK EGN+GG  GG  +PKLNLQP TLPV+D KS EISGT ARSKSSNPFG  RPREEVLA+KGHDWKKLD++LE KIKEVS+ EKTEKSNAI
Subjt:  ADSDNWERKKKEGNTGGIIGG--QPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAI

Query:  SFGKKSFNNRIEQRGAGGSRRHCRR
          GKKSF N   +     + R  R+
Subjt:  SFGKKSFNNRIEQRGAGGSRRHCRR

SwissProt top hitse value%identityAlignment
Q9AUJ7 Eukaryotic translation initiation factor 4B15.3e-0735Show/hide
Query:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEI-SGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS
        +DSD W R           G +P+LNL P   P  D  +  + +  VARS+ S PFGA +PREEVLA+KG DW+K++ ++E K    +    +  ++A S
Subjt:  ADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEI-SGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS

Query:  FGKKSFNNRIEQRGAGGSRR
            S  +++   G+ G+ R
Subjt:  FGKKSFNNRIEQRGAGGSRR

Q9LIN5 Eukaryotic translation initiation factor 4B11.3e-0532Show/hide
Query:  DSDNWERKKKE--------GNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT-----VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSV
        D DNW   K++        G++ G  G + +  L      V + + +E  G+     V ++   NPFGA RPRE+VLA+KG DWKK+D ++E+K      
Subjt:  DSDNWERKKKE--------GNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT-----VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSV

Query:  EEKTEKSNAISFGKKSFNNRIEQRG
           T   ++     +S  NR E  G
Subjt:  EEKTEKSNAISFGKKSFNNRIEQRG

Q9SAD7 Eukaryotic translation initiation factor 4B22.9e-0536Show/hide
Query:  DSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSS--NPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS
        + D W R       GG+   + +L  +P       +   E+S T    K+S  +PFGA RPRE+VLA+KG DWKKLD  +E+K  + S     + S   S
Subjt:  DSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSS--NPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS

Q9SZP8 Eukaryotic translation initiation factor 4B35.5e-1237.96Show/hide
Query:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE
        ++SD W R+++E     G+     G +P+L LQP TLPV+     +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++   
Subjt:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE

Query:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRN
          EK N  S GK  F       G G  R+   R  R+
Subjt:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRN

Arabidopsis top hitse value%identityAlignment
AT1G13020.1 eukaryotic initiation factor 4B22.1e-0636Show/hide
Query:  DSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSS--NPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS
        + D W R       GG+   + +L  +P       +   E+S T    K+S  +PFGA RPRE+VLA+KG DWKKLD  +E+K  + S     + S   S
Subjt:  DSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSS--NPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAIS

AT3G26400.1 eukaryotic translation initiation factor 4B19.2e-0732Show/hide
Query:  DSDNWERKKKE--------GNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT-----VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSV
        D DNW   K++        G++ G  G + +  L      V + + +E  G+     V ++   NPFGA RPRE+VLA+KG DWKK+D ++E+K      
Subjt:  DSDNWERKKKE--------GNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT-----VARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSV

Query:  EEKTEKSNAISFGKKSFNNRIEQRG
           T   ++     +S  NR E  G
Subjt:  EEKTEKSNAISFGKKSFNNRIEQRG

AT4G38710.1 glycine-rich protein3.9e-1337.96Show/hide
Query:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE
        ++SD W R+++E     G+     G +P+L LQP TLPV+     +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++   
Subjt:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE

Query:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRN
          EK N  S GK  F       G G  R+   R  R+
Subjt:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRN

AT4G38710.2 glycine-rich protein2.7e-1435.9Show/hide
Query:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE
        ++SD W R+++E     G+     G +P+L LQP TLPV+     +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++   
Subjt:  ADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----DRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEE

Query:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRNLFLTVGRNMKMEIAKANAE
          EK N  S GK  F       G G  R+   R  R+   +   +  ME+   N E
Subjt:  KTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRNLFLTVGRNMKMEIAKANAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTTCACGGCGAGCAGCAGTGGGCAGATTCAGACAATTGGGAGAGGAAGAAAAAGGAAGGTAACACTGGTGGCATCATTGGCGGTCAACCAAAGCTTAATTTGCA
GCCATGGACACTGCCGGTTAGCGACAGGAAATCGTTGGAGATATCAGGGACGGTGGCAAGGTCCAAGAGTTCAAACCCATTTGGAGCGATGAGGCCGAGGGAAGAGGTTC
TAGCCAAGAAGGGACATGACTGGAAAAAGCTTGACAAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGCCATTTCCTTTGGG
AAAAAGAGCTTTAACAATAGAATAGAACAGAGAGGAGCTGGAGGAAGCCGAAGGCACTGCCGCAGGAGTCACCGGAATCTCTTCTTGACGGTGGGGAGGAATATGAAAAT
GGAGATTGCAAAGGCGAACGCAGAGGGGACTATAATGGAGCTTGATGTAACACTGAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTTCACGGCGAGCAGCAGTGGGCAGATTCAGACAATTGGGAGAGGAAGAAAAAGGAAGGTAACACTGGTGGCATCATTGGCGGTCAACCAAAGCTTAATTTGCA
GCCATGGACACTGCCGGTTAGCGACAGGAAATCGTTGGAGATATCAGGGACGGTGGCAAGGTCCAAGAGTTCAAACCCATTTGGAGCGATGAGGCCGAGGGAAGAGGTTC
TAGCCAAGAAGGGACATGACTGGAAAAAGCTTGACAAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGCCATTTCCTTTGGG
AAAAAGAGCTTTAACAATAGAATAGAACAGAGAGGAGCTGGAGGAAGCCGAAGGCACTGCCGCAGGAGTCACCGGAATCTCTTCTTGACGGTGGGGAGGAATATGAAAAT
GGAGATTGCAAAGGCGAACGCAGAGGGGACTATAATGGAGCTTGATGTAACACTGAGAGATTGA
Protein sequenceShow/hide protein sequence
MRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAMRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFG
KKSFNNRIEQRGAGGSRRHCRRSHRNLFLTVGRNMKMEIAKANAEGTIMELDVTLRD