; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006033 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006033
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein CHROMATIN REMODELING 20 isoform X4
Genome locationChr07:11906635..11906922
RNA-Seq ExpressionHG10006033
SyntenyHG10006033
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0051179 - localization (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016301 - kinase activity (molecular function)
GO:0016773 - phosphotransferase activity, alcohol group as acceptor (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047189.1 hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa]2.0e-0830.77Show/hide
Query:  VVSRLLADYSWMEVKEVLERHFYSPVLINPFMDDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNL
        ++++L A     +++++LE +F + ++INP  D+ AL+ ++E S   L   EGKW+  G+ +LK ++W    +S+   +  +G W+ +KNL
Subjt:  VVSRLLADYSWMEVKEVLERHFYSPVLINPFMDDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNL

KAA0062491.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.3e-0452.38Show/hide
Query:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPL
        EGKW+ + N HLK DRW+N  HS+   L  +G W+ +KNLPL
Subjt:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPL

TYJ95573.1 nuclear pore complex protein NUP160 isoform X5 [Cucumis melo var. makuwa]1.8e-0433.8Show/hide
Query:  EVLERHFYSPVLINPFMDDKALVRIEEDSTYQL--AEGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWI
        ++LE+ F +     P  DD AL+ +++ S   L   +GKW+ +GN HLK ++W N  H++   L  +G W+
Subjt:  EVLERHFYSPVLINPFMDDKALVRIEEDSTYQL--AEGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWI

TYJ98681.1 protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo var. makuwa]7.1e-0636.62Show/hide
Query:  PVLINPFMDDKALVRIEEDSTYQLAE--GKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY
        P+L +P   + AL+R+      +L E  GKW+ +GN HLK ++W+   H+    +C +  WI ++NLPL Y
Subjt:  PVLINPFMDDKALVRIEEDSTYQLAE--GKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY

XP_038904899.1 uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]2.4e-0639.68Show/hide
Query:  DDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY
        D+   V +E +S  +L    GKW+++G+ HLK +RW+N  H +  ++  +G WI +KNLPL Y
Subjt:  DDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY

TrEMBL top hitse value%identityAlignment
A0A5A7U128 Uncharacterized protein9.7e-0930.77Show/hide
Query:  VVSRLLADYSWMEVKEVLERHFYSPVLINPFMDDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNL
        ++++L A     +++++LE +F + ++INP  D+ AL+ ++E S   L   EGKW+  G+ +LK ++W    +S+   +  +G W+ +KNL
Subjt:  VVSRLLADYSWMEVKEVLERHFYSPVLINPFMDDKALVRIEEDSTYQLA--EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNL

A0A5D3B8G5 Nuclear pore complex protein NUP160 isoform X58.5e-0533.8Show/hide
Query:  EVLERHFYSPVLINPFMDDKALVRIEEDSTYQL--AEGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWI
        ++LE+ F +     P  DD AL+ +++ S   L   +GKW+ +GN HLK ++W N  H++   L  +G W+
Subjt:  EVLERHFYSPVLINPFMDDKALVRIEEDSTYQL--AEGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWI

A0A5D3BI91 Putative 3,4-dihydroxy-2-butanone kinase isoform X51.9e-0447.73Show/hide
Query:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY
        +GKW+ +GN HLK++RW N  HS       +G W+ +KNLPL Y
Subjt:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY

A0A5D3BJ01 Protein CHROMATIN REMODELING 20 isoform X43.4e-0636.62Show/hide
Query:  PVLINPFMDDKALVRIEEDSTYQLAE--GKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY
        P+L +P   + AL+R+      +L E  GKW+ +GN HLK ++W+   H+    +C +  WI ++NLPL Y
Subjt:  PVLINPFMDDKALVRIEEDSTYQLAE--GKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY

A0A5D3DUN5 Integrase, catalytic core1.1e-0452.38Show/hide
Query:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPL
        EGKW+ + N HLK DRW+N  HS+   L  +G W+ +KNLPL
Subjt:  EGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTGTTTCAAGATTGCTTGCTGATTATTCTTGGATGGAGGTAAAAGAGGTTCTGGAACGTCATTTTTATTCTCCAGTTTTAATTAATCCGTTTATGGATGACAA
AGCTTTGGTTAGAATTGAGGAAGATTCAACGTATCAATTAGCTGAGGGAAAGTGGAAGCGTTATGGGAATTTGCATCTAAAGTTGGATCGATGGTCTAATCGAAGTCATT
CTAAATCAGAGTTCTTATGTAGTTTTGGAGTGTGGATTCTAGTTAAGAACTTACCTCTAGCTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTGTTTCAAGATTGCTTGCTGATTATTCTTGGATGGAGGTAAAAGAGGTTCTGGAACGTCATTTTTATTCTCCAGTTTTAATTAATCCGTTTATGGATGACAA
AGCTTTGGTTAGAATTGAGGAAGATTCAACGTATCAATTAGCTGAGGGAAAGTGGAAGCGTTATGGGAATTTGCATCTAAAGTTGGATCGATGGTCTAATCGAAGTCATT
CTAAATCAGAGTTCTTATGTAGTTTTGGAGTGTGGATTCTAGTTAAGAACTTACCTCTAGCTTATTGA
Protein sequenceShow/hide protein sequence
MLVVSRLLADYSWMEVKEVLERHFYSPVLINPFMDDKALVRIEEDSTYQLAEGKWKRYGNLHLKLDRWSNRSHSKSEFLCSFGVWILVKNLPLAY