; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006044 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006044
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationChr07:12200866..12202003
RNA-Seq ExpressionHG10006044
SyntenyHG10006044
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061399.1 photosystem I reaction center subunit IV [Cucumis melo var. makuwa]1.4e-5898.48Show/hide
Query:  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP
        VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDE APPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP
Subjt:  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP

Query:  NTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        NTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  NTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

KAE8651724.1 hypothetical protein Csa_006032 [Cucumis sativus]1.3e-5993.75Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIR  ASDE APPP A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++EVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_004152807.2 photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]1.3e-5993.75Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIR  ASDE APPP A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++EVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]2.3e-6498.61Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDE APPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_038889433.1 photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]8.7e-6497.92Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDE APPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRF+KVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein6.3e-6093.75Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIR  ASDE APPP A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++EVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like1.1e-6498.61Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDE APPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A5A7V6V9 Photosystem I reaction center subunit IV6.9e-5998.48Show/hide
Query:  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP
        VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDE APPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP
Subjt:  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDP

Query:  NTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        NTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  NTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like1.1e-5386.81Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RAAA +  APPP AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like7.4e-5386.11Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGV+IPSS TI SSSSR SS+AFFPKNS SISRS RLV+RAAA +  APPP AAA A A AE PKPKPAPIGPKRG KVKILR+ESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic5.0e-3064.23Show/hide
Query:  SSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR
        SS + RL      P  + S  RS+RLV+RAA   E A   PAAA     A +   KP PIGPKRG+KV+I+RKESYWYK VGSVV VDQDP TRYPVVVR
Subjt:  SSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR

Query:  FNKVNYASVSTNNYALDEVEEVA
        FNKVNYA+VSTNNYALDE++EVA
Subjt:  FNKVNYASVSTNNYALDEVEEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic1.0e-3057.34Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK
        MA+ N++  AS  ++ +    S++++  +++ FF  + N  S + RLV+RAA  +E APP  AA    A A     KP PIGPKRG KV+ILRKESYWYK
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
          GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic5.3e-3259.31Show/hide
Query:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRS-SRLVIRAAASDEPAPPPPAAAPAAATAEEPK-PKPAPIGPKRGAKVKILRKESYW
        MA+S+++  ASG ++ +    +S+++  +S+ FF  + N+ + +  RLV+RAA   E A PP A A A   A   K  KP PIGPKRG KV++LRKESYW
Subjt:  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRS-SRLVIRAAASDEPAPPPPAAAPAAATAEEPK-PKPAPIGPKRGAKVKILRKESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        YK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDEVEEV
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic6.8e-2755.41Show/hide
Query:  LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSISRSSRLVIRAA-------ASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKE
        ++  A+G ++ ++   +    SS   + ++F P      S  SRLV+RAA       AS + +    AAAPA   A   K KP PIGPKRG+KVKILRKE
Subjt:  LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSISRSSRLVIRAA-------ASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKE

Query:  SYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        SYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  SYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic1.6e-3162.32Show/hide
Query:  VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPA------PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV
        V+P++ T+++ +SS  SS++F P      +  SRLV+RAA    PA       P  AAAP  ATA   KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV
Subjt:  VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPA------PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
         VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-24.8e-2855.41Show/hide
Query:  LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSISRSSRLVIRAA-------ASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKE
        ++  A+G ++ ++   +    SS   + ++F P      S  SRLV+RAA       AS + +    AAAPA   A   K KP PIGPKRG+KVKILRKE
Subjt:  LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSISRSSRLVIRAA-------ASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKE

Query:  SYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        SYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  SYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.1e-3262.32Show/hide
Query:  VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPA------PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV
        V+P++ T+++ +SS  SS++F P      +  SRLV+RAA    PA       P  AAAP  ATA   KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV
Subjt:  VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPA------PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV

Query:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
         VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCTTGCATTGCTTCTGGAGTCGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTTGCCTTCTTCCCCAAGAA
TTCCAACTCTATTTCTAGATCTTCTAGATTAGTTATCCGTGCTGCCGCCTCCGATGAGCCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCTGAAGAGC
CCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAG
GATCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCTCTAACCTTTCTTGCATTGCTTCTGGAGTCGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTTGCCTTCTTCCCCAAGAA
TTCCAACTCTATTTCTAGATCTTCTAGATTAGTTATCCGTGCTGCCGCCTCCGATGAGCCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCTGAAGAGC
CCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAG
GATCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCTTAA
Protein sequenceShow/hide protein sequence
MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEPAPPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQ
DPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA