CuGenDBv2

Gene ID	HG10006057
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	INO80 complex subunit C
Genome location	Chr07:12530677..12539379
RNA-Seq Expression	HG10006057
Synteny	HG10006057
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0031011 - Ino80 complex (cellular component) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]

1.4e-64

99.19

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

1.1e-64

99.19

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

8.9e-64

95.93

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAV+L
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]

1.1e-64

94.62

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLSYFHHSA
        VIRSLPNEYVQRYLAMRNAAVVL +    A
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLSYFHHSA

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

1.6e-65

100

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

6.7e-65

99.19

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

A0A1S3B479 INO80 complex subunit C isoform X1

5.1e-65

99.19

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

A0A6J1CRZ9 INO80 complex subunit C isoform X1

4.3e-64

95.93

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAV+L
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

A0A6J1FBP9 INO80 complex subunit C isoform X1

5.6e-64

97.56

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

A0A6J1HLV4 INO80 complex subunit C isoform X1

5.6e-64

97.56

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
        VIRSLPNEYVQRYLAMRNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

2.7e-07

37.88

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Query:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVL
        Y ++E+PPS+ P K+ CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL
Subjt:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVL

Q5BJY3 INO80 complex subunit C

3.0e-14

40.66

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C

3.0e-14

40.66

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C

8.0e-15

42.86

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies6

4.4e-13

41.67

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Query:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL
Subjt:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

8.5e-04

54.29

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Query:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

1.4e-43

65.85

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Query:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCKR+CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVL
         +RSL ++ V +YL++RNAAVVL
Subjt:  VIRSLPNEYVQRYLAMRNAAVVL

Sequences

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CDS sequence

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ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTG
GAAACATCTGAAGCAAATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAA
TCTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTT
CAGAGGTATTTGGCCATGAGAAATGCAGCGGTTGTTCTAAGTTATTTCCACCACTCAGCTTGTTTCTTGAGTTCCATGTCATCGTTCGTGGGTGCACGTGATGAAGACCC
ACCTTTGGGTTTCTTTGCTTGGGCTGTCGAAGGGACTGATTATAAGAAGGGGTCGCACGAGGAGCTGCAGTGGCAGATGACCGGGTTGAACACGACAGCGCTGGCGACGG
GAGTGGATGAGCGAAAGTCGAAGAAGTGTTAG

mRNA sequence

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Protein sequence

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MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVVLSYFHHSACFLSSMSSFVGARDEDPPLGFFAWAVEGTDYKKGSHEELQWQMTGLNTTALATGVDERKSKKC

HG10006057 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome