; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006076 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006076
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon protein
Genome locationChr07:13051434..13052372
RNA-Seq ExpressionHG10006076
SyntenyHG10006076
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-0626.22Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKT--SRVFHTSRPQSAVE--------------------------AI
        +S+  +A++H  T  ED+  VE ++  ++ G WR    TF+  +L  + ++M++K   S +  T   +  ++                           +
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKT--SRVFHTSRPQSAVE--------------------------AI

Query:  VFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS
        VFG+DR TGG   TS  +G +   D + D    +   N+E+F IL+P  +E P  E++P+T  S
Subjt:  VFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS

KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-0727.59Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTSRVFHTSRPQSAVEA-----------------------------
        +S+ S+A+KH  T  ED+  VE ++  V+ G WRA  +TF+P +L  V+  M +     F  +  +  +EA                             
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTSRVFHTSRPQSAVEA-----------------------------

Query:  -IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
         +VFG+DR T G   T   +G ++A D + D    +   N+E+F I +P  ++ P  E++ +  TS + +AG+S
Subjt:  -IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]7.3e-0628.09Show/hide
Query:  EASSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA-------------------------
        E +S+ S+A+KH  T  ED+V VE ++  V+ G WRA   TF+  +L     +  M       F  +  Q  +E                          
Subjt:  EASSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA-------------------------

Query:  -----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
             +VFG+DR TGG   T   +  + A D + D    +   N+E+F I +P  +E P  E++P+  TS + +AG+S
Subjt:  -----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0630.66Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANV-LRMMQQKTSRVFHTSRPQSAVEAIVFGKDRTTGGCAITSTAVGLKLAVDKD
        +S+  +A++H  T  ED+  VE ++  ++ G WR    TF+  +L +  +R +  K    F+          +VFG+DR TGG   TS  +G +   D +
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANV-LRMMQQKTSRVFHTSRPQSAVEAIVFGKDRTTGGCAITSTAVGLKLAVDKD

Query:  NDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS
         D    +   N+E+F IL+P  +E P  E++P+T  S
Subjt:  NDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]4.3e-0629.38Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLAN---VLRMMQQKTSRVFHTSRPQSAVEA--------------------------
        +S+ S+A+KH  T  ED+  VE ++  V+ G WRA   TF+P +L     +  MM Q  S  F  +  +  +EA                          
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLAN---VLRMMQQKTSRVFHTSRPQSAVEA--------------------------

Query:  ----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
            IVFG+D  TG    T   +G + A D + D    +   N+E+F I +P  +E P  E++P+  TS + +AG+S
Subjt:  ----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like2.1e-0629.38Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLAN---VLRMMQQKTSRVFHTSRPQSAVEA--------------------------
        +S+ S+A+KH  T  ED+  VE ++  V+ G WRA   TF+P +L     +  MM Q  S  F  +  +  +EA                          
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLAN---VLRMMQQKTSRVFHTSRPQSAVEA--------------------------

Query:  ----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
            IVFG+D  TG    T   +G + A D + D    +   N+E+F I +P  +E P  E++P+  TS + +AG+S
Subjt:  ----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

A0A5A7VE44 Retrotransposon protein8.5e-0827.59Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTSRVFHTSRPQSAVEA-----------------------------
        +S+ S+A+KH  T  ED+  VE ++  V+ G WRA  +TF+P +L  V+  M +     F  +  +  +EA                             
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTSRVFHTSRPQSAVEA-----------------------------

Query:  -IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
         +VFG+DR T G   T   +G ++A D + D    +   N+E+F I +P  ++ P  E++ +  TS + +AG+S
Subjt:  -IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

A0A5D3C7T4 Uncharacterized protein3.6e-0628.09Show/hide
Query:  EASSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA-------------------------
        E +S+ S+A+KH  T  ED+V VE ++  V+ G WRA   TF+  +L     +  M       F  +  Q  +E                          
Subjt:  EASSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA-------------------------

Query:  -----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS
             +VFG+DR TGG   T   +  + A D + D    +   N+E+F I +P  +E P  E++P+  TS + +AG+S
Subjt:  -----IVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPT--TSGSREAGTS

A0A5D3D879 Retrotransposon protein2.3e-0536.7Show/hide
Query:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTS------------RVFHTSRPQSAVEAIVFGKDRTTGGCAITST
        ++S SRA KH+ TN E+   VE +V  V S  WR+   TFR  +LA V RMM +K S             + + + P       VFGKDRT  G + T  
Subjt:  SSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTS------------RVFHTSRPQSAVEAIVFGKDRTTGGCAITST

Query:  AVGLKLAVD
         VG  +  D
Subjt:  AVGLKLAVD

A0A5D3DJR9 Retrotransposon protein3.0e-0527.61Show/hide
Query:  RASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA------------------------------IV
        RA+KH  T  ED+  VE  +  V+ G WR    TF+  +L     +  M + T   F  +  +  ++A                              I+
Subjt:  RASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLA--NVLRMMQQKTSRVFHTSRPQSAVEA------------------------------IV

Query:  FGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS
        FG+DR TGG   T   +G ++A D + D    +   N+ENF IL+P  +E P  E++ +T  S
Subjt:  FGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQSPNVENFYILDPPFVESPIPENLPTTSGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATCGAGTTCGAGATCTAGAGCCTCTAAACATTTAGGGACAAACGACGAGGACAAGGTTCGGGTAGAAATTATGGTACATCATGTTCAGTCTGGCAGCTGGCG
TGCTGGCACCGACACATTTCGACCTTGTTTTTTGGCAAATGTGCTGAGGATGATGCAACAAAAAACTTCCAGGGTGTTCCATACAAGCAGACCCCAATCTGCAGTCGAGG
CGATTGTCTTTGGCAAAGACAGAACTACAGGGGGATGCGCCATTACCTCAACTGCTGTTGGATTGAAACTTGCAGTGGACAAGGACAATGACGGTGATTTAAATAACCAG
TCTCCAAACGTTGAAAATTTCTACATCCTTGATCCACCGTTTGTAGAATCGCCAATACCAGAGAACCTTCCAACTACCTCGGGTAGTAGAGAGGCTGGGACTAGCGCACT
GAGACAAGAAGTAAGAGGTCTTTTAACTTGGTCTATTGGTAGGATTGCACAATGCCTAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATCGAGTTCGAGATCTAGAGCCTCTAAACATTTAGGGACAAACGACGAGGACAAGGTTCGGGTAGAAATTATGGTACATCATGTTCAGTCTGGCAGCTGGCG
TGCTGGCACCGACACATTTCGACCTTGTTTTTTGGCAAATGTGCTGAGGATGATGCAACAAAAAACTTCCAGGGTGTTCCATACAAGCAGACCCCAATCTGCAGTCGAGG
CGATTGTCTTTGGCAAAGACAGAACTACAGGGGGATGCGCCATTACCTCAACTGCTGTTGGATTGAAACTTGCAGTGGACAAGGACAATGACGGTGATTTAAATAACCAG
TCTCCAAACGTTGAAAATTTCTACATCCTTGATCCACCGTTTGTAGAATCGCCAATACCAGAGAACCTTCCAACTACCTCGGGTAGTAGAGAGGCTGGGACTAGCGCACT
GAGACAAGAAGTAAGAGGTCTTTTAACTTGGTCTATTGGTAGGATTGCACAATGCCTAACGTGA
Protein sequenceShow/hide protein sequence
MEASSSRSRASKHLGTNDEDKVRVEIMVHHVQSGSWRAGTDTFRPCFLANVLRMMQQKTSRVFHTSRPQSAVEAIVFGKDRTTGGCAITSTAVGLKLAVDKDNDGDLNNQ
SPNVENFYILDPPFVESPIPENLPTTSGSREAGTSALRQEVRGLLTWSIGRIAQCLT