; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006105 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006105
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase
Genome locationChr07:13749809..13750327
RNA-Seq ExpressionHG10006105
SyntenyHG10006105
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031097052.1 uncharacterized protein LOC116001306 [Ipomoea triloba]1.8e-0731.48Show/hide
Query:  KFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQHVSHVR-NVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFN
        +FQQD   FQ++T++ QQ+   FQ+ETRT +QHL +QI++LA+T+++L++Q G  P+Q V + + NVS +   S   L   ++      + E  E     
Subjt:  KFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQHVSHVR-NVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFN

Query:  EKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        ++ H+PQ  +        P+ +   +  I   PFP RF   +  E++++  ET   V  + P
Subjt:  EKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

XP_031101911.1 uncharacterized protein LOC116005813, partial [Ipomoea triloba]1.2e-0832.12Show/hide
Query:  SMLKFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELF
        S +  +  V +    T++ QQ+   FQ+ETRT +QHL +Q++QLA+T+++L++Q G LP+Q  V+  +N S VT  S   LP P++  +   + E NE  
Subjt:  SMLKFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELF

Query:  GFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
           ++ H PQ  + L + S +        T +   PFP R    ++ EE+++  ET   V  + P
Subjt:  GFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

XP_031108716.1 uncharacterized protein LOC116013208 [Ipomoea triloba]5.6e-0933.12Show/hide
Query:  FQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQA
        FQ++T++ QQ+   FQ+ETRT +QHL +Q++QLA+T+++L++Q G LP+Q  V+  +NVS +T  S   L   ++      +K FN+     ++ H+PQ 
Subjt:  FQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQA

Query:  PRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
         + L + S +        T +   PFP R    ++ EE+++  ET   V  + P
Subjt:  PRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

XP_031116495.1 uncharacterized protein LOC116020153 [Ipomoea triloba]1.2e-0832.12Show/hide
Query:  SMLKFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELF
        S +  +  V +    T++ QQ+   FQ+ETRT +QHL +Q++QLA+T+++L++Q G LP+Q  V+  +N S VT  S   LP P++  +   + E NE  
Subjt:  SMLKFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELF

Query:  GFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
           ++ H PQ  + L + S +        T +   PFP R    ++ EE+++  ET   V  + P
Subjt:  GFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

XP_031127585.1 uncharacterized protein LOC116029679 [Ipomoea triloba]4.7e-0833.33Show/hide
Query:  KFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFN
        +FQQ    FQ++T++ QQ+   FQ+ETRT +QHL +Q++QLA+T+++L++Q G LP+Q  V+  +NVSV T  S   L + ++      + E NE     
Subjt:  KFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFN

Query:  EKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        ++ H+PQ  + L  V   P       + +   PF  R    +  EE+++  ET   V  + P
Subjt:  EKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

TrEMBL top hitse value%identityAlignment
A0A6P6V7Z9 Reverse transcriptase1.1e-0728.57Show/hide
Query:  VESMLK-FQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQS-GMLPTQHVSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFN
        +E M+K   Q     QQE ++ QQE+ +FQ+ETR  +++L  Q++QLAT+++ L+  + G LP+Q +                 PNP E+ + M  +   
Subjt:  VESMLK-FQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQS-GMLPTQHVSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFN

Query:  ELFGFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        E+        K + PR  E+   D    S+++  + + PFPGRF   ++ E +++  +T   V  + P
Subjt:  ELFGFNEKGHKPQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

A0A6P6VH31 uncharacterized protein LOC1137232975.6e-0732Show/hide
Query:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL
        K +      FQ+ET+T + +L NQ++QLA+T+N+L++Q SG LP+Q  V+  +N S +T  S   LP PS+ ++    +E  EL    EK      PR+L
Subjt:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL

Query:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        EQ       +          PFP R    ++ E++++  +T   V  + P
Subjt:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

A0A6P6VJZ0 uncharacterized protein LOC1137232955.6e-0732Show/hide
Query:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL
        K +      FQ+ET+T + +L NQ++QLA+T+N+L++Q SG LP+Q  V+  +N S +T  S   LP PS+ ++    +E  EL    EK      PR+L
Subjt:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL

Query:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        EQ       +          PFP R    ++ E++++  +T   V  + P
Subjt:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

A0A6P6WXZ3 uncharacterized protein LOC1137355115.6e-0732Show/hide
Query:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL
        K +      FQ+ET+T + +L NQ++QLA+T+N+L++Q SG LP+Q  V+  +N S +T  S   LP PS+ ++    +E  EL    EK      PR+L
Subjt:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL

Query:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        EQ       +          PFP R    ++ E++++  +T   V  + P
Subjt:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

A0A6P6X8T1 Reverse transcriptase7.4e-0732Show/hide
Query:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL
        K +      FQ+ET+T + +L NQ++QLA+T+N+L++Q SG LP+Q  V+  +N S +T  S   LP PS+ ++    +E  EL    EK      PR+L
Subjt:  KKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQ-SGMLPTQH-VSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHKPQAPRSL

Query:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP
        EQ       +          PFP R    ++ E++++  +T   V  + P
Subjt:  EQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAATCTATGCTAAAGTTCCAGCAAGATGTGGGGACTTTTCAACAAGAAACGAAAAAGATCCAGCAGGAGAATGCCTTGTTCCAGAAAGAGACAAGGACTGGTAT
GCAGCACTTAGCCAACCAGATCACTCAGTTGGCTACCACAATAAACAAACTAGACACTCAAAGTGGTATGCTTCCAACTCAACATGTGTCCCATGTGAGGAATGTAAGTG
TTGTAACGACTGTAAGTCCATCTAATCTCCCTAACCCCTCTGAATCTGTGAATTTTATGACTAAAAAAGAATTCAATGAATTGTTTGGTTTTAATGAGAAAGGGCATAAA
CCCCAAGCACCAAGGAGCCTTGAACAGGTTAGTACTGATCCTTTAAATCAGTCAGATTTGAATACTTACATTCATGTTGCTCCTTTTCCTGGAAGATTCCTTAGTCTTGA
GAGGAATGAAGAAAAAGAAAAACCAACTGAAACCCTTGGAATGGTGACTGCTAGCTCCCCTAAAAAGAGCTCGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAATCTATGCTAAAGTTCCAGCAAGATGTGGGGACTTTTCAACAAGAAACGAAAAAGATCCAGCAGGAGAATGCCTTGTTCCAGAAAGAGACAAGGACTGGTAT
GCAGCACTTAGCCAACCAGATCACTCAGTTGGCTACCACAATAAACAAACTAGACACTCAAAGTGGTATGCTTCCAACTCAACATGTGTCCCATGTGAGGAATGTAAGTG
TTGTAACGACTGTAAGTCCATCTAATCTCCCTAACCCCTCTGAATCTGTGAATTTTATGACTAAAAAAGAATTCAATGAATTGTTTGGTTTTAATGAGAAAGGGCATAAA
CCCCAAGCACCAAGGAGCCTTGAACAGGTTAGTACTGATCCTTTAAATCAGTCAGATTTGAATACTTACATTCATGTTGCTCCTTTTCCTGGAAGATTCCTTAGTCTTGA
GAGGAATGAAGAAAAAGAAAAACCAACTGAAACCCTTGGAATGGTGACTGCTAGCTCCCCTAAAAAGAGCTCGATGTAG
Protein sequenceShow/hide protein sequence
MVESMLKFQQDVGTFQQETKKIQQENALFQKETRTGMQHLANQITQLATTINKLDTQSGMLPTQHVSHVRNVSVVTTVSPSNLPNPSESVNFMTKKEFNELFGFNEKGHK
PQAPRSLEQVSTDPLNQSDLNTYIHVAPFPGRFLSLERNEEKEKPTETLGMVTASSPKKSSM