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HG10006153 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006153
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH10
Genome locationChr07:14519739..14520159
RNA-Seq ExpressionHG10006153
SyntenyHG10006153
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0006401 - RNA catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR012961 - ATP-dependent RNA helicase Ski2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450745.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo]1.8e-2098.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

XP_022929766.1 DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita moschata]6.2e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

XP_022996497.1 DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita maxima]6.2e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

XP_023546254.1 DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita pepo subsp. pepo]6.2e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

XP_038889177.1 DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Benincasa hispida]4.8e-21100Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

TrEMBL top hitse value%identityAlignment
A0A0A0LHE5 DSHCT domain-containing protein2.6e-2096.55Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAAS+SLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

A0A1S3BQY6 DExH-box ATP-dependent RNA helicase DExH108.8e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

A0A6J1EP26 DExH-box ATP-dependent RNA helicase DExH103.0e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

A0A6J1K235 DExH-box ATP-dependent RNA helicase DExH103.0e-2198.28Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

A0A7J7BVL7 DSHCT domain-containing protein5.7e-2094.83Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKF+AAS+SLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

SwissProt top hitse value%identityAlignment
P42285 Exosome RNA helicase MTR45.2e-1055.17Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I+FA SLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Q23223 mRNA transport homolog 41.7e-0854.39Show/hide
Query:  TDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        TD+FEGSIIR+ RRL+E L ++  AA A+    LE KF  A  +L+R I+FA SLYL
Subjt:  TDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Q9CZU3 Exosome RNA helicase MTR45.2e-1055.17Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I+FA SLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Q9XIF2 DExH-box ATP-dependent RNA helicase DExH94.8e-0850.91Show/hide
Query:  IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+FA SLYL
Subjt:  IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Q9ZVW2 DExH-box ATP-dependent RNA helicase DExH102.9e-2191.38Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AAS+SLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Arabidopsis top hitse value%identityAlignment
AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein3.4e-0950.91Show/hide
Query:  IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+FA SLYL
Subjt:  IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein2.1e-2291.38Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        MTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AAS+SLRRGIMFANSLYL
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein9.3e-0743.1Show/hide
Query:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
        +TD+ EG I+R+  RLDE   + + AA  +G   L  K  AAS++++R I+FA SLY+
Subjt:  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTCGGGGAGGTAACCTTAGAGAG
CAAGTTTTCTGCAGCCAGTGACAGCCTCCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTCGGGGAGGTAACCTTAGAGAG
CAAGTTTTCTGCAGCCAGTGACAGCCTCCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG
Protein sequenceShow/hide protein sequence
MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL