; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006208 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006208
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr07:15836191..15836403
RNA-Seq ExpressionHG10006208
SyntenyHG10006208
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598873.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.0e-2785.71Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

KAG7020910.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-2681.43Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SACGR+G +NEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

KAG7029815.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-2785.71Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

XP_022997384.1 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X1 [Cucurbita maxima]1.6e-2684.29Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

XP_022997385.1 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X2 [Cucurbita maxima]1.6e-2684.29Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

TrEMBL top hitse value%identityAlignment
A0A0A0LMF0 Uncharacterized protein4.9e-2682.86Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKIL L DE R+EGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

A0A6J1FBH7 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like2.9e-2681.43Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SACGR+G +NEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

A0A6J1HWN3 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like3.8e-2681.43Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MFERMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RS+GL+FDE TC+T+ SACGR+G +NEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

A0A6J1K9G3 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X27.6e-2784.29Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

A0A6J1KB83 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like isoform X17.6e-2784.29Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        MF+RMKDCGLSPSLVTYNVML VYGK+GRSWDKILGL DE RSEGLQFDE TC+T+ SACGR+G INEAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

SwissProt top hitse value%identityAlignment
B8Y6I0 Pentatricopeptide repeat-containing protein 10, chloroplastic2.1e-1346.38Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA
        +F  ++  G++P+LVTYNV+L VYG++GRSW +I+ L DE R+ G++ D  T +T+ +AC R G ++EA
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA

O64624 Pentatricopeptide repeat-containing protein At2g18940, chloroplastic7.1e-2265.71Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        +FERMK+ G SP+LVTYNV+L V+GK+GRSW KILG+ DE RS+GL+FDE TC+T+ SAC R+G + EAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

Q9LYZ9 Pentatricopeptide repeat-containing protein At5g028607.3e-1140.58Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA
        +F++M++ G  P+L+TYNV+L+V+GK+G  W+KI  L ++ +S+G+  D  T NT+ + C R     EA
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA

Q9S7Q2 Pentatricopeptide repeat-containing protein At1g74850, chloroplastic1.6e-1042.86Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        + +RMK+  +SPS++TYN +++   + G  W+ +LGLF E R EG+Q D  T NT+ SAC  +G  +EA+
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

Q9SIC9 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic5.8e-0837.14Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        +F  MK+ GL P+LVTYN ++   GK G  + ++   FDE +  G+Q D  T N++ + C R G    A+
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

Arabidopsis top hitse value%identityAlignment
AT1G74850.1 plastid transcriptionally active 21.2e-1142.86Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        + +RMK+  +SPS++TYN +++   + G  W+ +LGLF E R EG+Q D  T NT+ SAC  +G  +EA+
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.0e-2365.71Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        +FERMK+ G SP+LVTYNV+L V+GK+GRSW KILG+ DE RS+GL+FDE TC+T+ SAC R+G + EAK
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

AT2G19280.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-0739.13Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA
        +F  MK  GL   +VTYN ++H YGK     +K+  L DE RS G+  D +T N +  +   +G+I+EA
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA

AT2G31400.1 genomes uncoupled 14.1e-0937.14Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK
        +F  MK+ GL P+LVTYN ++   GK G  + ++   FDE +  G+Q D  T N++ + C R G    A+
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK

AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein5.2e-1240.58Show/hide
Query:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA
        +F++M++ G  P+L+TYNV+L+V+GK+G  W+KI  L ++ +S+G+  D  T NT+ + C R     EA
Subjt:  MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGAGAATGAAGGATTGTGGCCTTTCTCCAAGTTTGGTTACTTACAATGTTATGCTTCATGTTTATGGGAAAATAGGTCGCTCTTGGGATAAAATTTTAGGCTT
ATTCGATGAAACGAGGAGTGAAGGTTTGCAATTTGATGAGTCTACCTGCAATACTATGACATCTGCGTGCGGAAGAAAGGGTTTTATAAATGAAGCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGAGAATGAAGGATTGTGGCCTTTCTCCAAGTTTGGTTACTTACAATGTTATGCTTCATGTTTATGGGAAAATAGGTCGCTCTTGGGATAAAATTTTAGGCTT
ATTCGATGAAACGAGGAGTGAAGGTTTGCAATTTGATGAGTCTACCTGCAATACTATGACATCTGCGTGCGGAAGAAAGGGTTTTATAAATGAAGCTAAATAA
Protein sequenceShow/hide protein sequence
MFERMKDCGLSPSLVTYNVMLHVYGKIGRSWDKILGLFDETRSEGLQFDESTCNTMTSACGRKGFINEAK