; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006268 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006268
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionsequence-specific DNA binding transcription factors;transcription regulators
Genome locationChr07:16667120..16667452
RNA-Seq ExpressionHG10006268
SyntenyHG10006268
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651649.1 hypothetical protein Csa_021260, partial [Cucumis sativus]1.1e-3985.45Show/hide
Query:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI
        MRSIHSFRSRRQATTIS LKP+RRRR+KLLHLP++TSSST       +AT +RTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYI ALQLKLNI
Subjt:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI

Query:  LKDLTSFYGL
        LKDLTSFYGL
Subjt:  LKDLTSFYGL
KAG6598843.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3680Show/hide
Query:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI
        MRSIHSFR RRQAT+ +NLKPTRRRRLKL+HLP+NT+SS+A+S     A A+ TTPS AMHKRLRNLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNI
Subjt:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI

Query:  LKDLTSFYGL
        LKDLTSFYGL
Subjt:  LKDLTSFYGL
OMP08066.1 hypothetical protein COLO4_06805 [Corchorus olitorius]3.5e-0435.45Show/hide
Query:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI
        MRS  S R RR+   ++  +  R R++ L +LP N +S          + + RT    ++ ++L  LQR++P   +E N++ LFQ TADYIF L+ K+++
Subjt:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI

Query:  LKDLTSFYGL
        L++L++FYG+
Subjt:  LKDLTSFYGL
TrEMBL top hitse value%identityAlignment
A0A0A0LJ57 Uncharacterized protein5.5e-4085.45Show/hide
Query:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI
        MRSIHSFRSRRQATTIS LKP+RRRR+KLLHLP++TSSST       +AT +RTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYI ALQLKLNI
Subjt:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI

Query:  LKDLTSFYGL
        LKDLTSFYGL
Subjt:  LKDLTSFYGL
A0A1R3KLV4 Uncharacterized protein1.7e-0435.45Show/hide
Query:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI
        MRS  S R RR+   ++  +  R R++ L +LP N +S          + + RT    ++ ++L  LQR++P   +E N++ LFQ TADYIF L+ K+++
Subjt:  MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNI

Query:  LKDLTSFYGL
        L++L++FYG+
Subjt:  LKDLTSFYGL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators9.7e-0538.78Show/hide
Query:  PSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDL
        P  A+H+R++ L+ LVP       L+ LF++TADYI AL++K+ +++ +
Subjt:  PSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCTATTCACTCATTTCGATCGAGAAGACAAGCCACCACCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGCTAAAGCTTCTTCACCTCCCAAGAAACACCTC
CTCCTCCACCGCTGTCTCCACCACCGCTGCCGCTGCCACCGCCTCCCGAACAACCCCCTCCGCCGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCC
ACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTCTATTCACTCATTTCGATCGAGAAGACAAGCCACCACCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGCTAAAGCTTCTTCACCTCCCAAGAAACACCTC
CTCCTCCACCGCTGTCTCCACCACCGCTGCCGCTGCCACCGCCTCCCGAACAACCCCCTCCGCCGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCC
ACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTT
TGA
Protein sequenceShow/hide protein sequence
MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL