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HG10006321 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006321
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon protein
Genome locationChr07:17307820..17308233
RNA-Seq ExpressionHG10006321
SyntenyHG10006321
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33871.1 retrotransposon protein [Cucumis melo subsp. melo]3.1e-1048.35Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG
        S++K LVD+LA + V ++DEE L+H LNGLPA    F TSIRTR   ++L EL  LL +E  ++     A+E  PTAMAAF   Q    RG
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG

KAA0038426.1 kelch repeat-containing protein [Cucumis melo var. makuwa]9.0e-1054.26Show/hide
Query:  VLVDRLAASGVKIDDEETLLHILNGLPAE---FRTSIRTR-DTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQR----RGGR
        VLVD L A GV IDDEE LL+IL+GLP++   FRTS R+R DT L L+E E LL+AEAK+I   Q+  +    AMAAFQ      R    RGGR
Subjt:  VLVDRLAASGVKIDDEETLLHILNGLPAE---FRTSIRTR-DTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQR----RGGR

KAA0059710.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-1047.92Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPF--QRRGGRF
        S++K LVD+L A+ V ++DEE L+H LNG PA    FRT IRTR   ++L EL  LL +E  ++    +A+E  PTAMAAF   Q    +RRG RF
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPF--QRRGGRF

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-1151.61Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRGGR
        S++K LVD+LAA+ V ++DEE L+H LNGLPA    FRTSIRTR   ++L EL  LL +E ++I    +A+E  PTAMAA   F P Q  G R
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRGGR

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]1.3e-1146.3Show/hide
Query:  LYRQKGVCRIYSAMFSKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQ
        LY +K          S++K LVD+L A+ V ++DEE L+H LNGLPA    FRTSIRTR+  ++L EL  LL +E ++I    +A+E  PTAMAA   F 
Subjt:  LYRQKGVCRIYSAMFSKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQ

Query:  PFQRRGGR
        P Q  G R
Subjt:  PFQRRGGR

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918256.1e-1246.3Show/hide
Query:  LYRQKGVCRIYSAMFSKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQ
        LY +K          S++K LVD+L A+ V ++DEE L+H LNGLPA    FRTSIRTR+  ++L EL  LL +E ++I    +A+E  PTAMAA   F 
Subjt:  LYRQKGVCRIYSAMFSKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQ

Query:  PFQRRGGR
        P Q  G R
Subjt:  PFQRRGGR

A0A5A7T881 Kelch repeat-containing protein4.3e-1054.26Show/hide
Query:  VLVDRLAASGVKIDDEETLLHILNGLPAE---FRTSIRTR-DTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQR----RGGR
        VLVD L A GV IDDEE LL+IL+GLP++   FRTS R+R DT L L+E E LL+AEAK+I   Q+  +    AMAAFQ      R    RGGR
Subjt:  VLVDRLAASGVKIDDEETLLHILNGLPAE---FRTSIRTR-DTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQR----RGGR

A0A5A7U7J4 Putative mitochondrial protein4.3e-1048.35Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG
        S++K LVD+LAA+ V ++DEE L+H LNGL A    FRTSIRTR+  ++L EL  L  +E  ++    +A+E  PTAMAAF   Q    RG
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG

A0A5A7UZE5 Putative mitochondrial protein7.9e-1251.61Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRGGR
        S++K LVD+LAA+ V ++DEE L+H LNGLPA    FRTSIRTR   ++L EL  LL +E ++I    +A+E  PTAMAA   F P Q  G R
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRGGR

E5GBM9 Retrotransposon protein1.5e-1048.35Show/hide
Query:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG
        S++K LVD+LA + V ++DEE L+H LNGLPA    F TSIRTR   ++L EL  LL +E  ++     A+E  PTAMAAF   Q    RG
Subjt:  SKVKVLVDRLAASGVKIDDEETLLHILNGLPA---EFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGGTACTATACCGTCAAAAAGGAGTCTGTCGAATCTATAGTGCAATGTTTTCAAAGGTGAAGGTACTAGTGGATAGACTTGCTGCTTCCGGGGTAAAAATAGA
TGACGAAGAGACTCTGCTGCACATCCTCAACGGACTACCAGCGGAATTTCGAACCTCTATCCGCACGCGCGACACCACACTAACACTGTCAGAACTCGAAGTTCTTCTCG
ATGCTGAAGCAAAATCGATCTGTAATCATCAGACGGCGGTTGAACCAACACCCACGGCGATGGCGGCTTTTCAATATTTCCAGCCGTTCCAGCGTAGAGGTGGTCGATTT
GCGCCAAACGCAGTCTGGCCGTGGCTCGGCGTGCAAGAGAATTGGGAAATTGCCAAAAATAGTCCCAAAAACAACGAGGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGGTACTATACCGTCAAAAAGGAGTCTGTCGAATCTATAGTGCAATGTTTTCAAAGGTGAAGGTACTAGTGGATAGACTTGCTGCTTCCGGGGTAAAAATAGA
TGACGAAGAGACTCTGCTGCACATCCTCAACGGACTACCAGCGGAATTTCGAACCTCTATCCGCACGCGCGACACCACACTAACACTGTCAGAACTCGAAGTTCTTCTCG
ATGCTGAAGCAAAATCGATCTGTAATCATCAGACGGCGGTTGAACCAACACCCACGGCGATGGCGGCTTTTCAATATTTCCAGCCGTTCCAGCGTAGAGGTGGTCGATTT
GCGCCAAACGCAGTCTGGCCGTGGCTCGGCGTGCAAGAGAATTGGGAAATTGCCAAAAATAGTCCCAAAAACAACGAGGGTTAA
Protein sequenceShow/hide protein sequence
MRKVLYRQKGVCRIYSAMFSKVKVLVDRLAASGVKIDDEETLLHILNGLPAEFRTSIRTRDTTLTLSELEVLLDAEAKSICNHQTAVEPTPTAMAAFQYFQPFQRRGGRF
APNAVWPWLGVQENWEIAKNSPKNNEG