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HG10006347 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006347
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA polymerase II-associated protein 3 isoform X1
Genome locationChr07:17561471..17562370
RNA-Seq ExpressionHG10006347
SyntenyHG10006347
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031011 - Ino80 complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453348.2 PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo]1.2e-2055.86Show/hide
Query:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK
        ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L FFCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKK
Subjt:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK

Query:  LKPQATGKEKE
        LKPQA GKEKE
Subjt:  LKPQATGKEKE

XP_008453365.2 PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo]1.2e-2055.86Show/hide
Query:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK
        ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L FFCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKK
Subjt:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK

Query:  LKPQATGKEKE
        LKPQA GKEKE
Subjt:  LKPQATGKEKE

XP_038890653.1 RNA polymerase II-associated protein 3 isoform X1 [Benincasa hispida]1.1e-1693.62Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

XP_038890654.1 RNA polymerase II-associated protein 3 isoform X2 [Benincasa hispida]1.1e-1693.62Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

XP_038890655.1 RNA polymerase II-associated protein 3 isoform X3 [Benincasa hispida]1.1e-1693.62Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSSGKHGRDQP+DFQGFLNDLQDWELSFKGKDKKLKPQA  KEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

TrEMBL top hitse value%identityAlignment
A0A0A0LGI8 Uncharacterized protein1.0e-1591.49Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSS KHGRDQ LDFQGFLNDLQDWE+SFKGKDKKLKPQA GKEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

A0A1S3BW25 RNA polymerase II-associated protein 3 isoform X36.0e-2155.86Show/hide
Query:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK
        ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L FFCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKK
Subjt:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK

Query:  LKPQATGKEKE
        LKPQA GKEKE
Subjt:  LKPQATGKEKE

A0A1S3BWU0 RNA polymerase II-associated protein 3 isoform X16.0e-2155.86Show/hide
Query:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK
        ++FFALAQS   ++I             + +  L  + S        FS++S  ++ L FFCS MADSSGKHGRD PLDFQGFLNDLQDWE+SFKGKDKK
Subjt:  VIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKK

Query:  LKPQATGKEKE
        LKPQA GKEKE
Subjt:  LKPQATGKEKE

A0A6J1DUX9 RNA polymerase II-associated protein 32.2e-1589.36Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSSGKHGRD  LDFQGFLND+QDWELS KGKDKKLKPQA GKEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

A0A6J1HPT1 RNA polymerase II-associated protein 3 isoform X14.9e-1587.23Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE
        MADSSGKHGRDQPLDFQGFLNDLQDWELS  G+DKKLKP A  KEKE
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQATGKEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56440.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-1175Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ
        MA S  KHGRDQ  DFQGF NDLQDWELS K KDKK+K Q
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ

AT1G56440.2 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-1175Show/hide
Query:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ
        MA S  KHGRDQ  DFQGF NDLQDWELS K KDKK+K Q
Subjt:  MADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDKKLKPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGAGTACATCCAAACTTCGTGGGCTATGTTATTTTTTTCGCTTTGGCCCAATCAGCTGGGATTTTACAGATTTTGAATCCACGGCGAAAACTCCGACCGGCGAA
CGGCTCCGACTCCGTGGAATTGCTGGACGCTTCGAGAAGCTCTTTCGAAGACCAGCTGCTACAATTTTCCATATTCTCTTTCTTCGTCTGGATTCTTCTTTTCTTCTGCT
CTCCCATGGCCGATTCCTCCGGCAAGCACGGGCGCGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTCTCCTTCAAGGGAAAAGACAAG
AAACTGAAGCCACAGGCCACTGGTAAAGAAAAGGAGGTATTACTCTATCAAATTTTCAGCTGCACAGTGAACTGCACATTTAAAAAACAAAAACGGCTAAGCCATCATGG
GTTGGCCTATGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGAGTACATCCAAACTTCGTGGGCTATGTTATTTTTTTCGCTTTGGCCCAATCAGCTGGGATTTTACAGATTTTGAATCCACGGCGAAAACTCCGACCGGCGAA
CGGCTCCGACTCCGTGGAATTGCTGGACGCTTCGAGAAGCTCTTTCGAAGACCAGCTGCTACAATTTTCCATATTCTCTTTCTTCGTCTGGATTCTTCTTTTCTTCTGCT
CTCCCATGGCCGATTCCTCCGGCAAGCACGGGCGCGATCAGCCTCTGGATTTCCAGGGATTTTTGAATGACTTGCAGGATTGGGAACTCTCCTTCAAGGGAAAAGACAAG
AAACTGAAGCCACAGGCCACTGGTAAAGAAAAGGAGGTATTACTCTATCAAATTTTCAGCTGCACAGTGAACTGCACATTTAAAAAACAAAAACGGCTAAGCCATCATGG
GTTGGCCTATGGGTAG
Protein sequenceShow/hide protein sequence
MLRVHPNFVGYVIFFALAQSAGILQILNPRRKLRPANGSDSVELLDASRSSFEDQLLQFSIFSFFVWILLFFCSPMADSSGKHGRDQPLDFQGFLNDLQDWELSFKGKDK
KLKPQATGKEKEVLLYQIFSCTVNCTFKKQKRLSHHGLAYG