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HG10006405 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006405
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA polymerase zeta catalytic subunit
Genome locationChr07:18178900..18189082
RNA-Seq ExpressionHG10006405
SyntenyHG10006405
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0019985 - translesion synthesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016035 - zeta DNA polymerase complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR030559 - DNA polymerase zeta catalytic subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599224.1 DNA polymerase zeta catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia]4.8e-2796.92Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

KAG7030229.1 DNA polymerase zeta catalytic subunit [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2796.92Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

XP_022999038.1 DNA polymerase zeta catalytic subunit [Cucurbita maxima]1.8e-2695.38Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

XP_023545347.1 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit [Cucurbita pepo subsp. pepo]6.2e-2795.38Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVP+LRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

XP_038890093.1 DNA polymerase zeta catalytic subunit isoform X1 [Benincasa hispida]1.8e-2696.92Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGD QSESSVFSVRIVSIDYYLAPPI GLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

TrEMBL top hitse value%identityAlignment
A0A0A0LFW0 DNA polymerase1.5e-2663.96Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGRRSSTVQAAREPHAWQFPATDEDRRLRKVVALLLR
        MGDSQSES VFSVRIVSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG          E      P  D+   L   V+L L 
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGRRSSTVQAAREPHAWQFPATDEDRRLRKVVALLLR

Query:  WVVSTNGHSKS
          +   G+S S
Subjt:  WVVSTNGHSKS

A0A5D3CRJ8 DNA polymerase1.7e-2590.77Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQ+ES VFSVR+VSIDYYLAPPI GL +SYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

A0A6J1DA95 DNA polymerase zeta catalytic subunit9.7e-2689.23Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        M DSQSESS+FSVRIVSIDYYLAPPI GLG+SYSSFQGGKVNEVPVLRIYG TPAGQKTC+H+HG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

A0A6J1G355 DNA polymerase zeta catalytic subunit1.3e-2592.31Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGD+QSESS+FSVRIVSIDYYLAPPI GLGVSYS FQGGKVN VPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

A0A6J1KIG8 DNA polymerase zeta catalytic subunit8.8e-2795.38Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        MGDSQSESS+FSVRIVSIDYYLAPPI GLGVSYSSFQGGKV+EVPVLRIYGSTPAGQKTCVHVHG
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

SwissProt top hitse value%identityAlignment
O60673 DNA polymerase zeta catalytic subunit4.5e-1255.36Show/hide
Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

Q61493 DNA polymerase zeta catalytic subunit1.3e-1155.36Show/hide
Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        +FSVRIV+ DYY+A P+ GL    S      V +VPV+R++G+TPAGQKTC+H+HG
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

Q766Z3 DNA polymerase zeta catalytic subunit3.7e-2275Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH

Q9GSR1 DNA polymerase zeta catalytic subunit1.6e-0946.43Show/hide
Query:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG
        V+SVR+V  D+Y+  P  G+   YS  +G ++  VPV+R++G    GQKTC+HVHG
Subjt:  VFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHG

Arabidopsis top hitse value%identityAlignment
AT1G67500.1 recovery protein 32.6e-2375Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH

AT1G67500.2 recovery protein 32.6e-2375Show/hide
Query:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH
        M DSQS S+VFS+RIVSIDYY+A PI G  + YSSFQG +VNEVPV+RIYGSTPAGQKTC+H+H
Subjt:  MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCA
AGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGACGGAGGAGTTCGACAGTTCAGGCGG
CGCGTGAGCCTCACGCGTGGCAGTTCCCGGCAACTGACGAAGACAGACGGCTTCGGAAGGTGGTGGCGCTTCTCCTAAGGTGGGTGGTGTCGACAAACGGCCACTCGAAA
TCGATGACCAAAATACCAAATCCTAACTCTATGAGATTGTTGTCGTCAAACGAAAGTTCGAAAGTTCGAAACTTTAGAGGGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATTCGCAATCAGAATCGAGCGTTTTCAGTGTTCGGATCGTCTCCATCGATTACTACCTTGCGCCTCCAATTACAGGCCTCGGCGTATCCTACAGTAGTTTTCA
AGGCGGGAAGGTGAACGAGGTCCCGGTATTGAGAATATATGGTTCCACTCCAGCTGGTCAGAAAACATGCGTCCATGTTCATGGACGGAGGAGTTCGACAGTTCAGGCGG
CGCGTGAGCCTCACGCGTGGCAGTTCCCGGCAACTGACGAAGACAGACGGCTTCGGAAGGTGGTGGCGCTTCTCCTAAGGTGGGTGGTGTCGACAAACGGCCACTCGAAA
TCGATGACCAAAATACCAAATCCTAACTCTATGAGATTGTTGTCGTCAAACGAAAGTTCGAAAGTTCGAAACTTTAGAGGGCTCTGA
Protein sequenceShow/hide protein sequence
MGDSQSESSVFSVRIVSIDYYLAPPITGLGVSYSSFQGGKVNEVPVLRIYGSTPAGQKTCVHVHGRRSSTVQAAREPHAWQFPATDEDRRLRKVVALLLRWVVSTNGHSK
SMTKIPNPNSMRLLSSNESSKVRNFRGL