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HG10006412 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006412
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCytochrome b6-f complex subunit 4
Genome locationChr07:18277135..18277545
RNA-Seq ExpressionHG10006412
SyntenyHG10006412
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function)
InterPro domainsIPR036150 - Cytochrome b/b6, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ATI24782.1 cytochrome b6f complex subunit IV [Plukenetia volubilis]3.6e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
QGU84438.1 cytochrome b6/f complex subunit IV [Casearia decandra]2.1e-1978.79Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAIF
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGT VALWLGIGATLP   +     + ID+IF
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAIF
YP_009180139.1 cytochrome b6/f complex subunit IV [Polygonatum cyrtonema]3.6e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
YP_009490115.1 cytochrome b6/f complex subunit IV [Daphniphyllum oldhamii]3.6e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
YP_009742919.1 cytochrome b6/f complex subunit IV [Cercidiphyllum magnificum]3.6e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
TrEMBL top hitse value%identityAlignment
A0A1W6FA31 Cytochrome b6-f complex subunit 41.7e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
A0A4V1H867 Cytochrome b6-f complex subunit 41.7e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
A0A650FD52 Cytochrome b6-f complex subunit 41.0e-1978.79Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAIF
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGT VALWLGIGATLP   +     + ID+IF
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAIF
A0A6C0U9R2 Cytochrome b6-f complex subunit 41.7e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
D3WEJ8 Cytochrome b6-f complex subunit 41.7e-1980Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
SwissProt top hitse value%identityAlignment
A0A366 Cytochrome b6-f complex subunit 48.9e-2198Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
Q06GW6 Cytochrome b6-f complex subunit 45.2e-2179.37Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPID
        MVSVP GLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPID
Q14FC6 Cytochrome b6-f complex subunit 41.4e-2178.46Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGT VALWLGIGATLP   +     + ID+I
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAI
Q3BAK6 Cytochrome b6-f complex subunit 46.8e-2179.37Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPID
        MVSVP GLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP   +     + ID
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPID
Q7FNS2 Cytochrome b6-f complex subunit 48.9e-2198Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLP
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
Arabidopsis top hitse value%identityAlignment
ATCG00730.1 photosynthetic electron transfer D1.8e-2196Show/hide
Query:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
        MVSVPAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTA ALWLGIGATLP
Subjt:  MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLP
ATCG00740.1 RNA polymerase subunit alpha4.1e-0560.53Show/hide
Query:  GATLPTPNNFQDASYPIDAIFMPVRNAIHVAESPHSPG
        G +L   NNF+D SYPIDA+FMPV NA H   S HS G
Subjt:  GATLPTPNNFQDASYPIDAIFMPVRNAIHVAESPHSPG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCGTACCGGCGGGATTATTAACTGTACCGTTTTTGGAGAATGTCAATAAATTCCAAAATCCTTTTCGTCGTCCAGTAGTGACAACCGTCTTTTTGATTGGTAC
CGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCTATCC
ATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGTGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGGCCTCCCGCTGGGGGCCCGCTAT
GCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACACGGGGACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCGTACCGGCGGGATTATTAACTGTACCGTTTTTGGAGAATGTCAATAAATTCCAAAATCCTTTTCGTCGTCCAGTAGTGACAACCGTCTTTTTGATTGGTAC
CGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCTATCC
ATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGTGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGGCCTCCCGCTGGGGGCCCGCTAT
GCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACACGGGGACGTAA
Protein sequenceShow/hide protein sequence
MVSVPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPTPNNFQDASYPIDAIFMPVRNAIHVAESPHSPGTTTQLSGACSTTELIARRAGLPLGARY
AKSERNPIPLFPFFAPMSPHGRDTGT