; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006423 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006423
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L27-like
Genome locationChr07:18415846..18416496
RNA-Seq ExpressionHG10006423
SyntenyHG10006423
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016651 - oxidoreductase activity, acting on NAD(P)H (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR001684 - Ribosomal protein L27
IPR018261 - Ribosomal protein L27, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583414.1 hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia]8.1e-7391.89Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

XP_016901663.1 PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]1.1e-7292.52Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

XP_022964702.1 uncharacterized protein LOC111464705 [Cucurbita moschata]8.1e-7391.89Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

XP_022970580.1 uncharacterized protein LOC111469515 [Cucurbita maxima]3.6e-7393.15Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT

XP_038877023.1 50S ribosomal protein L27-like [Benincasa hispida]9.5e-7492.57Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVT VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERV PGNIIVRQRGTRF PGDYVG+GKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCV FEKHKLSGRKWVHVIPKEGHVLHP+YA TSTSPELKTTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

TrEMBL top hitse value%identityAlignment
A0A1S4E0A6 50S ribosomal protein L27-like5.1e-7392.52Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A5A7TXR2 50S ribosomal protein L27-like5.1e-7392.52Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A6J1DS22 uncharacterized protein LOC1110238677.4e-7292.52Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIAT FCKRLNV++LVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PG+YVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEGC+KFEKHKLSGRKWVHVIPKEGHVLHPVYA  ST+ ELKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A6J1HP14 uncharacterized protein LOC1114647053.9e-7391.89Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

A0A6J1I390 uncharacterized protein LOC1114695151.8e-7393.15Show/hide
Query:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL
        MLNIATTFCKRLNV++LVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK+LGVKKFGGERVIPGNIIVRQRGTRF PGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT

SwissProt top hitse value%identityAlignment
A1URM7 50S ribosomal protein L274.7e-2365.06Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+ PG+ VGIGKDHTLF+L  G V F + K++ R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

A9IM57 50S ribosomal protein L271.1e-2469.88Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+ PGD VGIGKDHTLFAL EG V F++ K   R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

B4RZH4 50S ribosomal protein L271.2e-2365.85Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI
        A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRF  GD +GIGKDHTLFALK+G V+F+      RK+V ++
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI

Q6G0T7 50S ribosomal protein L272.1e-2365.85Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+ PGD VGIGKDHTLFAL  G V F++ K + R +V V+
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI

Q6G507 50S ribosomal protein L271.4e-2468.67Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+ PGD VGIGKDHTLFAL +G V F++ K + R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

Arabidopsis top hitse value%identityAlignment
AT2G16930.1 Ribosomal protein L27 family protein6.6e-5769.8Show/hide
Query:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT
        LN A + C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRF PGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT2G16930.2 Ribosomal protein L27 family protein6.6e-5769.8Show/hide
Query:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT
        LN A + C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRF PGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT2G16930.3 Ribosomal protein L27 family protein6.6e-5769.8Show/hide
Query:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT
        LN A + C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRF PGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT5G15220.1 Ribosomal protein L27 family protein6.0e-5871.52Show/hide
Query:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT
        LN A + C+R+++REL+T VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRF PGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVY--AMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y  A  + S +LKT +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVY--AMTSTSPELKTTT

AT5G40950.1 ribosomal protein large subunit 278.4e-2060Show/hide
Query:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKE
        A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+F  G  VGIGKDHT+F+L +G VKFEK     RK + V P+E
Subjt:  ATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATTGCAACCACGTTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAAGATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCAGCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAGGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAATTGAAGACAAC
GACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATTGCAACCACGTTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAAGATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCAGCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAGGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAATTGAAGACAAC
GACATGA
Protein sequenceShow/hide protein sequence
MLNIATTFCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKDLGVKKFGGERVIPGNIIVRQRGTRFQPGDYVGIGKDHTLFALKEGCVKF
EKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT