; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006481 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006481
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L18
Genome locationChr07:19043679..19044149
RNA-Seq ExpressionHG10006481
SyntenyHG10006481
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0098655 - cation transmembrane transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
GO:0019829 - ATPase-coupled cation transmembrane transporter activity (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063646.1 putative manganese-transporting ATPase PDR2 [Cucumis melo var. makuwa]2.6e-7496.69Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_008455473.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]2.6e-7496.69Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_022150717.1 uncharacterized protein LOC111018783 [Momordica charantia]1.2e-7497.35Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH+APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_022999138.1 uncharacterized protein LOC111493611 [Cucurbita maxima]3.4e-7495.36Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        + HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

XP_038890306.1 50S ribosomal protein L18 [Benincasa hispida]1.3e-7699.34Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

TrEMBL top hitse value%identityAlignment
A0A0A0LLI4 Uncharacterized protein2.8e-7496.03Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH APRSFFG+EDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A1S3C286 50S ribosomal protein L181.3e-7496.69Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A5A7VB47 Putative manganese-transporting ATPase PDR21.3e-7496.69Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A6J1DBH5 uncharacterized protein LOC1110187835.7e-7597.35Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        +VH+APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

A0A6J1KIR9 uncharacterized protein LOC1114936111.7e-7495.36Show/hide
Query:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
        + HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL
Subjt:  QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACL

Query:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        AVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Subjt:  AVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

SwissProt top hitse value%identityAlignment
A5FZU9 50S ribosomal protein L183.9e-0427.27Show/hide
Query:  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAV
        ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ LK+ +D  A  AVG+++AERA+EA V T     R    + G+++A+
Subjt:  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAV

Query:  VQSLIDNGID
         ++  ++G+D
Subjt:  VQSLIDNGID

B1LWR0 50S ribosomal protein L183.0e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +   V  K +A A +  K +K  LK+ +D+ A  AVG+++AERA+ A V T     R    + G+++AV ++  + G++
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

B1Z777 50S ribosomal protein L182.3e-0432.61Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +      + +A A +  KD+KA LK+ +D  A  AVG+++AERA+ A V T     R    F G+++A+  +  + G+D
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

B7L0T4 50S ribosomal protein L185.1e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +      + +A A +  KD+K+ LK+ +D  A  AVG+++AERA+ A V T     R    F G+++A+  +  + G+D
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

C3MAZ6 50S ribosomal protein L181.3e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L V  S + + A +   V  K +A A T   D+K+ LK+ +D  A  AVG++LAERA +A V    +  R    + G+++A+ ++  + G++
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein1.3e-7187.16Show/hide
Query:  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG
        +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G
Subjt:  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG

Query:  RILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        RIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Subjt:  RILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

AT1G08845.2 Ribosomal L18p/L5e family protein1.3e-7187.16Show/hide
Query:  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG
        +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G
Subjt:  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG

Query:  RILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
        RIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Subjt:  RILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

AT3G20230.1 Ribosomal L18p/L5e family protein3.3e-2244.25Show/hide
Query:  SKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGK
        +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+  + S  D  AC  +G+++AER+ EADVY  SY PR+ ++ EGK
Subjt:  SKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGK

Query:  IRAVVQSLIDNGI
        +  V+ ++ ++GI
Subjt:  IRAVVQSLIDNGI

AT3G22450.1 Ribosomal L18p/L5e family protein5.4e-2547.9Show/hide
Query:  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKI
        K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L SR ++ AC AVG +LA+R+ E D++   YTPR+ DK EGK+
Subjt:  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKI

Query:  RAVVQSLIDNGIDVKIYLE
        + V+Q+LIDNG++VK+ L+
Subjt:  RAVVQSLIDNGIDVKIYLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTCTATCACAGGTTCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAAGTGAAGAAATC
CAAGAATCCGAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAACGGTTCGTTTCAGCATCACTTACGC
ACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATT
TTGGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTCGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAA
TGGGATTGATGTAAAAATTTATCTGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTCTATCACAGGTTCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAAGTGAAGAAATC
CAAGAATCCGAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAACGGTTCGTTTCAGCATCACTTACGC
ACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATT
TTGGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTCGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAA
TGGGATTGATGTAAAAATTTATCTGGAGTAA
Protein sequenceShow/hide protein sequence
MDALSQVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRI
LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE