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HG10006494 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006494
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionWD repeat-containing protein 48
Genome locationChr07:19194567..19196233
RNA-Seq ExpressionHG10006494
SyntenyHG10006494
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0016579 - protein deubiquitination (biological process)
GO:0043130 - ubiquitin binding (molecular function)
InterPro domainsIPR021772 - WDR48/Bun107


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33906.1 nucleotide binding protein [Cucumis melo subsp. melo]2.3e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

KAA0063633.1 WD repeat-containing protein 48 [Cucumis melo var. makuwa]2.3e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

XP_004139215.1 WD repeat-containing protein 48 [Cucumis sativus]2.3e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

XP_022999257.1 WD repeat-containing protein 48-like [Cucurbita maxima]2.3e-4398.88Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
        +VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ

XP_038890074.1 WD repeat-containing protein 48 [Benincasa hispida]1.3e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN  PDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

TrEMBL top hitse value%identityAlignment
A0A0A0LJF0 WD_REPEATS_REGION domain-containing protein1.1e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A5A7V6A0 WD repeat-containing protein 481.1e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A5D3D4C5 WD repeat-containing protein 481.1e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

A0A6J1KAE3 WD repeat-containing protein 48-like1.1e-4398.88Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
        +VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQ

E5GBR4 Nucleotide binding protein1.1e-4396.7Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

SwissProt top hitse value%identityAlignment
Q16MY0 WD repeat-containing protein 48 homolog3.3e-0530.68Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKL--KPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        +V  +V+EK+        +  D+P   G S++  + S         ++  +  IE+LCN+ +  P+M L TVR++IWK+  DL  +YR
Subjt:  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKL--KPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q32PG3 WD repeat-containing protein 484.4e-0557.14Show/hide
Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q4R2Z6 WD repeat-containing protein 484.4e-0557.14Show/hide
Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q5F3K4 WD repeat-containing protein 484.4e-0557.14Show/hide
Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q8TAF3 WD repeat-containing protein 484.4e-0557.14Show/hide
Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Arabidopsis top hitse value%identityAlignment
AT3G05090.1 Transducin/WD40 repeat-like superfamily protein4.4e-2965.96Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +V NYV+EKMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Subjt:  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

AT3G05090.2 Transducin/WD40 repeat-like superfamily protein4.4e-2965.96Show/hide
Query:  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
        +V NYV+EKMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Subjt:  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCC
ATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTA
TAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTT
CAAGGCAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCC
ATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTA
TAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTT
CAAGGCAGGTGA
Protein sequenceShow/hide protein sequence
MDNLWAEGKFYVQPNPLTALGLEVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVV
QGR