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HG10006531 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006531
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPSII 6.1 kDa protein
Genome locationChr07:19582995..19584013
RNA-Seq ExpressionHG10006531
SyntenyHG10006531
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]4.9e-5390.3Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LLGWILA VF LIWALYF+YASSLDEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]1.7e-5388.72Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAG+FGLIWALYF+YASSLDEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]3.9e-5079.7Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++SGTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAG+FG IWALYF+YASSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]3.0e-5081.2Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRL ++QKMKKGGIKCR+EEK EGK+S+ESM+SGTV AVA   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAG+FG IWALYF+YASSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.3e-5893.98Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSRLLLKGSSKVLPSP +AAHRLPMLQKMKKGGIKCRVEEK EGKKSEES+VSGT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAGVF LIWALYF+YASSLDEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein2.4e-5390.3Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LLGWILA VF LIWALYF+YASSLDEDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein8.1e-5488.72Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAG+FGLIWALYF+YASSLDEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein2.7e-4975.48Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHR----------------------LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAV
        MASTLL HSRLLLKGSSK+LPS  MAA                        LP LQKMK G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAV
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHR----------------------LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAV

Query:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        ALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYF+YASSLDEDEDSGLSL
Subjt:  ALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein1.9e-5079.7Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++SGTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWILAG+FG IWALYF+YASSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein1.0e-4881.2Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS SR+LLKGSS +LPSP MAAHRLP   KMK+  IKC+ EEK EGK+SEE MVSGTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LGWIL G+FGLIW+LYF+YASSLDED+DSGLSL
Subjt:  LGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic2.0e-2553.73Show/hide
Query:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN
        AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LLGWIL GVFGLIW  +F+Y SSL+EDE+SGLSL
Subjt:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic6.5e-2449.63Show/hide
Query:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK--SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSN
        +A   L H+  +   SS +L  P+M           K+  + C +E K    +  +  +   G  +  A AA   + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK--SEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        NLLGWIL GVFGLIWALYF+YAS L+EDE+SGLSL
Subjt:  NLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.3e-1951.49Show/hide
Query:  LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDS
        LP ++  +   ++C   ++A    +       +++A+A    A A PA+ALVDER+STEGTGL  GLSNNLLGWIL GVFGLIW+LY IY S L+EDE+S
Subjt:  LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDS

Query:  G
        G
Subjt:  G

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.4e-1038Show/hide
Query:  MKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLD--EDEDSGLSL
        + + G +  V    +       +     +   + A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA++FI    L   ED D GL L
Subjt:  MKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.4e-2653.73Show/hide
Query:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN
        AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL
        LLGWIL GVFGLIW  +F+Y SSL+EDE+SGLSL
Subjt:  LLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAA
GAAGGGAGGGATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAG
CAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGT
TTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAA
GAAGGGAGGGATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAG
CAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGT
TTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTCTGA
Protein sequenceShow/hide protein sequence
MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFG
LIWALYFIYASSLDEDEDSGLSL