; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10006540 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10006540
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAlba domain-containing protein
Genome locationChr07:19647996..19649264
RNA-Seq ExpressionHG10006540
SyntenyHG10006540
Gene Ontology termsGO:0048235 - pollen sperm cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139384.1 uncharacterized protein At2g34160 [Cucumis sativus]4.6e-5795.14Show/hide
Query:  ATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        ATIAVSGAT  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  ATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ
        LGKSEKFDSLMTAATAVPE VVA AAAA   EEEKKAEESKEEQ
Subjt:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ

XP_008456222.1 PREDICTED: uncharacterized protein At2g34160 [Cucumis melo]7.9e-5793.79Show/hide
Query:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGAT  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ
        VLGKSEKFDSLMTAATAVPE VVA AAA    EEEKKAEE+KEEQ
Subjt:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ

XP_022946134.1 uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata]6.9e-5383.54Show/hide
Query:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT           TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAAAAA----DVEEEKKAEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA A A A       EEKK EESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAAAAA----DVEEEKKAEESKEEQ

XP_022999100.1 uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]1.5e-5280.98Show/hide
Query:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT           TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAA---------AAADVEEEKKAEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA  A         AA    EEKK EESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAA---------AAADVEEEKKAEESKEEQ

XP_038877259.1 uncharacterized protein At2g34160-like [Benincasa hispida]2.1e-5792.31Show/hide
Query:  MATIAVSGATTTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        MATIAVSGA  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  MATIAVSGATTTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEE
        LGKSEKFDSLMTAATAVPEVV   A  AA  EEEKKAEE+KE+
Subjt:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEE

TrEMBL top hitse value%identityAlignment
A0A0A0LG69 Alba domain-containing protein2.2e-5795.14Show/hide
Query:  ATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        ATIAVSGAT  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  ATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ
        LGKSEKFDSLMTAATAVPE VVA AAAA   EEEKKAEESKEEQ
Subjt:  LGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ

A0A1S3C2U1 uncharacterized protein At2g341603.8e-5793.79Show/hide
Query:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGAT  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ
        VLGKSEKFDSLMTAATAVPE VVA AAA    EEEKKAEE+KEEQ
Subjt:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ

A0A5D3D4G4 Alba DNA/RNA-binding protein3.8e-5793.79Show/hide
Query:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGAT  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGAT-TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ
        VLGKSEKFDSLMTAATAVPE VVA AAA    EEEKKAEE+KEEQ
Subjt:  VLGKSEKFDSLMTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ

A0A6J1G2Y0 uncharacterized protein At2g34160-like isoform X13.3e-5383.54Show/hide
Query:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT           TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAAAAA----DVEEEKKAEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA A A A       EEKK EESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAAAAA----DVEEEKKAEESKEEQ

A0A6J1KEC8 uncharacterized protein At2g34160 isoform X17.4e-5380.98Show/hide
Query:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT           TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT----------TTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAA---------AAADVEEEKKAEESKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA  A         AA    EEKK EESKEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPEVVVAGAA---------AAADVEEEKKAEESKEEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341604.2e-3775.93Show/hide
Query:  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
        T++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM
Subjt:  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM

Query:  TAATAVPE
         AA    E
Subjt:  TAATAVPE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein8.7e-3866.41Show/hide
Query:  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT
        +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM 
Subjt:  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT

Query:  AATAVPEVVVAGAAAAADVEEEKKAEESKEE
        AA                  EEK+A E++E+
Subjt:  AATAVPEVVVAGAAAAADVEEEKKAEESKEE

AT2G34160.1 Alba DNA/RNA-binding protein3.0e-3875.93Show/hide
Query:  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
        T++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM
Subjt:  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM

Query:  TAATAVPE
         AA    E
Subjt:  TAATAVPE

AT3G04620.1 Alba DNA/RNA-binding protein1.4e-4371.53Show/hide
Query:  MATIAVSGATTTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        +A    +   T ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIV
Subjt:  MATIAVSGATTTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAAT--AVPEVVVAGAAAAADVEEEKKAEESKE
        LGKS+KFDSL+   T    PE   A A   A VE +++   + E
Subjt:  LGKSEKFDSLMTAAT--AVPEVVVAGAAAAADVEEEKKAEESKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGATTGCAGTATCGGGAGCCACAACCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCCAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAA
GAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAGA
AGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGAAAGTCTGAGAAGTTTGATTCTCTG
ATGACTGCGGCCACGGCAGTACCGGAGGTGGTGGTGGCTGGCGCTGCTGCTGCTGCTGATGTTGAAGAGGAGAAAAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGATTGCAGTATCGGGAGCCACAACCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCCAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAA
GAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAGA
AGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGAAAGTCTGAGAAGTTTGATTCTCTG
ATGACTGCGGCCACGGCAGTACCGGAGGTGGTGGTGGCTGGCGCTGCTGCTGCTGCTGATGTTGAAGAGGAGAAAAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG
Protein sequenceShow/hide protein sequence
MATIAVSGATTTETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
MTAATAVPEVVVAGAAAAADVEEEKKAEESKEEQ