CuGenDBv2

Gene ID	HG10006542
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	flowering locus K homology domain
Genome location	Chr07:19657903..19658475
RNA-Seq Expression	HG10006542
Synteny	HG10006542
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008456234.1 PREDICTED: flowering locus K homology domain isoform X2 [Cucumis melo]

5.3e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

XP_011648742.1 flowering locus K homology domain isoform X2 [Cucumis sativus]

5.3e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

XP_022143057.1 flowering locus K homology domain [Momordica charantia]

3.1e-20

91.67

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQ QAG +TDQ YNSY AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

XP_038877255.1 flowering locus K homology domain isoform X1 [Benincasa hispida]

1.5e-22

94.92

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQ GVSTDQ YNSYAAHGSVYASPPANPAAHAGHAGGYG+VYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

XP_038877258.1 flowering locus K homology domain isoform X2 [Benincasa hispida]

1.5e-22

94.92

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQ GVSTDQ YNSYAAHGSVYASPPANPAAHAGHAGGYG+VYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ91 Uncharacterized protein

2.6e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

A0A1S3C2U6 flowering locus K homology domain isoform X1

2.6e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

A0A1S3C3F3 flowering locus K homology domain isoform X2

2.6e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

A0A5D3D4G7 Flowering locus K-like proteiny domain isoform X1

2.6e-20

93.22

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

A0A6J1CPP3 flowering locus K homology domain

1.5e-20

91.67

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Query:  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFMAGAGAPAQ QAG +TDQ YNSY AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
Subjt:  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

SwissProt top hits

e value

%identity

Alignment

Q9SR13 Flowering locus K homology domain

2.4e-07

54.1

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Query:  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFM  AGA APAQPQ      Q YN YA HGSVYA+ P NP       GGY + Y + YGY
Subjt:  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

Arabidopsis top hits

e value

%identity

Alignment

AT3G04610.1 RNA-binding KH domain-containing protein

1.7e-08

54.1

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Query:  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
        NFM  AGA APAQPQ      Q YN YA HGSVYA+ P NP       GGY + Y + YGY
Subjt:  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

Sequences

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CDS sequence

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ATGCCCATTGGTCATGACGTTAAATATAATTTGAGGGACTTGGACATTTTTCAATTCAAGGACCCAAGACAAAAATTAAAAATTCAAAACATTGTTACACTTTTTAAAGT
TTGGGACAAAATAAATTTTATGGCCGGTGCTGGAGCTCCAGCCCAACCTCAAGCTGGGGTTTCGACAGACCAAAGCTACAACTCATATGCTGCTCATGGTTCAGTTTACG
CGTCTCCCCCTGCAAACCCAGCAGCTCATGCTGGTCATGCTGGAGGCTATGGCTCTGTTTACGGTACGAATTATGGGTACTAA

mRNA sequence

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Protein sequence

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MPIGHDVKYNLRDLDIFQFKDPRQKLKIQNIVTLFKVWDKINFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

HG10006542 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome